PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236633.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 394aa    MW: 44002.3 Da    PI: 7.8467
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236633.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.65.9e-33258313156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  XP_008236633.1 258 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 313
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-30255316IPR009057Homeodomain-like
SuperFamilySSF466892.19E-18255316IPR009057Homeodomain-like
PROSITE profilePS5129414.318255315IPR017930Myb domain
TIGRFAMsTIGR015572.6E-27258313IPR006447Myb domain, plants
PfamPF002496.1E-8260311IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGSVPPELSL DFRPTFVPKT ISDFLKEVSM IGSVSERLSK LDDFVKRLEE EMRKIDAFKR  60
ELPLCMFLLN DAILALKEDA VQCAAPNVQP VLEEFIPLKK DCEKNNGGTN NNKKEKDSRD  120
KKNWMSSVQL WNTDNYQHPS TDFPYDRKQV SEIDSKRNEA ENGLANEDPF QTCRNRAAGR  180
AFMPFKTYPA FSVTAARKED KEELPVHGLS LLTPGIKNPK EESASSGSRS TCGRAVSFST  240
ANAQSNMRTP PQQPTSRKQR RCWSPELHRR FVNALQQLGG SQVATPKQIR ELMQVDGLTN  300
DEVKSHLQKY RLHTRRVPAA TAAPDNQSVV VLGGLWMSQD QYADSSKASS SQSGSPQGPL  360
HLTGTGGDDE DDEDAKSESY SWKGHIQKPG KNDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-14258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-14258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-14258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-14258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-14258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-14258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-14258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-14258311255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236633.10.0PREDICTED: uncharacterized protein LOC103335407
TrEMBLM5VM720.0M5VM72_PRUPE; Uncharacterized protein
STRINGXP_008236633.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-57G2-like family protein