PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236124.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 619aa    MW: 69420.7 Da    PI: 4.92
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236124.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12355396854
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +Er+RR+++N+++ +Lr+l+P+ +      K++Ka+iL  A++Y+k+L
  XP_008236124.1 355 AERKRRKKLNERLYRLRSLVPNiS------KMDKAAILGDAIDYVKDL 396
                     7*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-188156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.501347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-14349401No hitNo description
SuperFamilySSF474593.4E-18350412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-16353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10355396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16355410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.22E-4501563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MIIIMQNLTE RLRPLVGLKG WDYCVIWKLS ENQRFIELMD CCCSGADENT QTNGGQELLF  60
PVYPVLPCRD TMQHSRTNSC DVLAQLPSSL SLDSGIYAHP LISNQPIWLN SSSNRDSSAM  120
AERDGTRVLV PSAGGLIELF VSKDVSEDQQ VIDYITAQCN ISKEQDNLIG AGCNTSFPVN  180
INDMSTEIQP HAFPGNENEG NDHLNSNHFQ QPPVVSPSVD HDSNVPYDIS VDRIRLCSAS  240
PMNFLQRVTY NSENCMKNGN SNLYHEQRSH ESLGEMGLQA DADAPNMHNS MHVMEAMENM  300
EQQGVEDQDS VKHDAQGGRT ADNSGSDCSD QIDDEDDTKY RRRTGKGPQS KNLFAERKRR  360
KKLNERLYRL RSLVPNISKM DKAAILGDAI DYVKDLLRQV KELQDELEQH SNDEGPNKKT  420
SANICGNHNN FQPEILNQNG TSITNKQEND DKPPDGFHVG RLGDIGNISK QQQDSEGTND  480
RGQQMEPQVG VTQLDGNEFF VTVFCEHKPG GFVRLMEALD TLGLEVTNAN VTSFRSLVSN  540
VFKVEKKDSE VVQADDVRDS LLEITRNPSS KVWPEMAKAK ASANGSGLDH FHHDDQHHYQ  600
QHNLHNYHAS SYLQHLYNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-133554121269Transcription factor MYC2
5gnj_B7e-133554121269Transcription factor MYC2
5gnj_E7e-133554121269Transcription factor MYC2
5gnj_F7e-133554121269Transcription factor MYC2
5gnj_G7e-133554121269Transcription factor MYC2
5gnj_I7e-133554121269Transcription factor MYC2
5gnj_M7e-133554121269Transcription factor MYC2
5gnj_N7e-133554121269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340361RRRTGKGPQSKNLFAERKRRKK
2355362ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236124.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLA0A251MYW20.0A0A251MYW2_PRUPE; Uncharacterized protein
STRINGXP_008236124.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-118bHLH family protein