PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008236017.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 272aa MW: 29380.6 Da PI: 6.587

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008236017.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.3	1.9e-09	92	138	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N++L k+l+ XP_008236017.1 92 KSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQG 138 77889999**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.2E-14	86	156	No hit	No description
SMART	SM00338	1.5E-10	87	155	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	8.9E-14	90	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.128	90	137	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.06E-6	92	138	No hit	No description
CDD	cd14686	5.22E-13	94	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEDGELDFSN QEMFSGPNMG GEHPSSCSMD SFFDDLLKDT HACTHTHTCN PPGPDYSHTH 60 TCFHVHTKIV SSATGSEDKA GTDDTAESGE KKSKKRPLGN REAVRKYREK KKARAASLED 120 EVVRLRALNQ QLLKRLQGQA ALEAEIARLK CLLVDIRGRI EGEIGSFPYQ KSVNPNLPNP 180 NIPSAYVMNP CNLQRDDQLY CLHQGADGKC GDGAVMNGQG FSGCDFENLQ CLVNQDGGYK 240 ELSGCGLGDG VSNGNSSATN KRKGGARAAA AN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008236017.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008236016.1	0.0	PREDICTED: basic leucine zipper 23 isoform X1
Refseq	XP_008236017.1	0.0	PREDICTED: basic leucine zipper 23 isoform X1
Refseq	XP_008236018.1	0.0	PREDICTED: basic leucine zipper 23 isoform X1
Refseq	XP_008236020.1	0.0	PREDICTED: basic leucine zipper 23 isoform X1
Refseq	XP_016650879.1	0.0	PREDICTED: basic leucine zipper 23 isoform X1
Swissprot	Q8GTS2	1e-114	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	M5VMR7	0.0	M5VMR7_PRUPE; Uncharacterized protein
STRING	XP_008236016.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	7e-97	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]