PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235979.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 942aa MW: 104677 Da PI: 6.3308

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235979.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.5	5.4e-28	620	669	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik XP_008235979.1 620 EKTISLPVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKM 669 799*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.314	609	690	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-23	623	669	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-19	835	929	No hit	No description
SMART	SM00666	5.1E-15	844	927	IPR000270	PB1 domain
PROSITE profile	PS51745	19.516	844	927	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.3E-17	845	922	No hit	No description
Pfam	PF00564	1.2E-13	845	926	IPR000270	PB1 domain
CDD	cd06407	3.25E-33	846	926	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MDYGALMPNS SSYGTLSDTT MEVDFMDEIL FEGCWLQSNA GFNLLQQQQQ QLVCPPISQD 60 LTDHPSHYFP PYDHQSNSTV AHLSMSPHQQ IYQEENTDGS YPESHSSFVV EGNTEAGRRL 120 WIGPRANPGP SSSVKERLML AIGYVKECTK GRDVLIQIWV PIKRGGRQYL TTHDQPLSLD 180 PNCKSLAGYR NVSKDYQFIT EEDSAESVGL PSRAFLGKLL EWTPDVCFFR SYEYPRIDYA 240 QQYDVRGSLA LPIFENGSGT CLGVFEIVMT PQKVNYRPEL EYVCQALETV DLRSSQNFWP 300 LCVKTRDELF QAALTEIVEV LASVCKTHRL PLAQTWALCI QQGKGGCRHS DENYAHCVST 360 VDAACFVADL DILGFHEACS EHHLFQGQGI VGTAFTINKP CFATDIKAFS KTEYPLSHHA 420 RMFGLHSAVA IPFRSVYTGP ADLVLEFFLP KDCQDPEEQK QMLNSLCIVI QQACRSLHVN 480 VDKELEEEIM FPIREPVIGS DGGLHKEETQ RLISSPTEEQ SGKESSWIAH MIEAQQKGKG 540 VSVSLDYQTE EPKEEFKVTT HWGNTQGSLH SGQVFSEFGQ LHQSSGSHGN VEGGADSYSF 600 GGRRTSGGRK AGEKRRTKTE KTISLPVLQQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT 660 RWPSRKIKMV GHSLKKLQLV IDSVQGAEGA IDIGSFYSSF PELNSPKFPG SGQYSSMNMS 720 DHSKQVNPQQ HDQSGLYSHV TTTKSPSSSC SQTSGPSVCV AGAQQHTITI NTLGSGDALM 780 TEDPVGVLKR ACSDADLHAS FQEETKLIHR SQSHKSFSDN LSYENLPPLP LPGSSGRSLW 840 DGGIYRVKAT FGMKKIRFSM LPNCSFRDLQ LEIARRFNLD DISRTGIKYL DDDCKWVLLN 900 CDADPEECME LYSSSPGRTV RLCLQQVFHP NLAASFGNRS PS

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MDYGALMPNS SSYGTLSDTT MEVDFMDEIL FEGCWLQSNA GFNLLQQQQQ QLVCPPISQD  60
LTDHPSHYFP PYDHQSNSTV AHLSMSPHQQ IYQEENTDGS YPESHSSFVV EGNTEAGRRL  120
WIGPRANPGP SSSVKERLML AIGYVKECTK GRDVLIQIWV PIKRGGRQYL TTHDQPLSLD  180
PNCKSLAGYR NVSKDYQFIT EEDSAESVGL PSRAFLGKLL EWTPDVCFFR SYEYPRIDYA  240
QQYDVRGSLA LPIFENGSGT CLGVFEIVMT PQKVNYRPEL EYVCQALETV DLRSSQNFWP  300
LCVKTRDELF QAALTEIVEV LASVCKTHRL PLAQTWALCI QQGKGGCRHS DENYAHCVST  360
VDAACFVADL DILGFHEACS EHHLFQGQGI VGTAFTINKP CFATDIKAFS KTEYPLSHHA  420
RMFGLHSAVA IPFRSVYTGP ADLVLEFFLP KDCQDPEEQK QMLNSLCIVI QQACRSLHVN  480
VDKELEEEIM FPIREPVIGS DGGLHKEETQ RLISSPTEEQ SGKESSWIAH MIEAQQKGKG  540
VSVSLDYQTE EPKEEFKVTT HWGNTQGSLH SGQVFSEFGQ LHQSSGSHGN VEGGADSYSF  600
GGRRTSGGRK AGEKRRTKTE KTISLPVLQQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT  660
RWPSRKIKMV GHSLKKLQLV IDSVQGAEGA IDIGSFYSSF PELNSPKFPG SGQYSSMNMS  720
DHSKQVNPQQ HDQSGLYSHV TTTKSPSSSC SQTSGPSVCV AGAQQHTITI NTLGSGDALM  780
TEDPVGVLKR ACSDADLHAS FQEETKLIHR SQSHKSFSDN LSYENLPPLP LPGSSGRSLW  840
DGGIYRVKAT FGMKKIRFSM LPNCSFRDLQ LEIARRFNLD DISRTGIKYL DDDCKWVLLN  900
CDADPEECME LYSSSPGRTV RLCLQQVFHP NLAASFGNRS PS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235979.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235979.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	M5VGP2	0.0	M5VGP2_PRUPE; Uncharacterized protein
STRING	XP_008235979.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein