PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235719.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 203aa    MW: 22687.6 Da    PI: 8.383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235719.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000212345123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C++ F++   L  H+++H
  XP_008235719.1 23 YACSFCKREFRSAQALGGHMNVH 45
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-62049No hitNo description
Gene3DG3DSA:3.30.160.604.0E-42148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-62346IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1982350IPR007087Zinc finger, C2H2
SMARTSM003550.00922345IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDCINFSFEG ENLCDISWAA KNYACSFCKR EFRSAQALGG HMNVHRRDRA RLRLLPPSLS  60
SEICPHNPNP SSYFSPSSSS SSSLSSSKGL PHNYSSCHSL LSPSLRALMS ATSSTDGNKK  120
PKFKYNSPQN HVPNLIPKKG KRGAVDHEAG EILKGFAQKD LDDEFNKVDD MKKESNIIRL  180
DLDMGFFKDH KEEVDLELRL GHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235719.11e-148PREDICTED: transcriptional regulator SUPERMAN
RefseqXP_008235720.11e-148PREDICTED: transcriptional regulator SUPERMAN
TrEMBLM5VLU71e-122M5VLU7_PRUPE; Uncharacterized protein
STRINGXP_008235719.11e-148(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1696368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.16e-14zinc finger protein 11