PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235702.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 743aa    MW: 82644.2 Da    PI: 6.2919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235702.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000395726091355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  XP_008235702.1 572 RQLIQDRIKELRELIPNgA------KCSIDSLLERTIKHMLFLQ 609
                     77899************77......7777779999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-366166IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.128559608IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-4572615IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MGTSDLHHVL RSLCFNTEWN YAIFWKLKYR ARMVLTWEDA YYDNCEQHDS SENRCFNKTL  60
DRLHDSHYSH DPLGLAVAKM SYHVYTLGEG IVGQVAVTRK HQWIFADNLF KNNCSPFQYC  120
DGWQSQFSAG IRTIVVVAVP HGVVQLGSLN KVIENVKLVS EIRDVFSTLQ DSPVEQIRNP  180
SQSGINSSVC LTSISPKGLA SGVITDCLHN LDKAANREES PDVWSSVFPH IGKDSDSSYV  240
FPLPENCLKK AVELVNKHGG LESSNLGCLE SAKLHQSKSS ILNSEHSKLV GVELLDRTKS  300
KGESSGCKDT RMTSMIYANP LSHGSVQENV NLCDSADLSA TFLNSAAHGR VNVDRVDFYQ  360
NEVLQVTEPS DVKFQKDLEN LDFQTESGHM DTSSTSMAFP AGCELHEALG PAFLNKGNYF  420
DWEAEKNGDG ITIEMPEGMK TGQLTSDSCQ EHLLEAVVAN VCHSGNDVKS EKSFCKSMQS  480
LLTTEKYPEP SSHTTHTIDS ENYSIDQPSL IAEDTQQCLS SSGVCGVISP KWFSSPCPSA  540
CSEQLERSSG PSKNNKKRAR PGENSRPRPR DRQLIQDRIK ELRELIPNGA KCSIDSLLER  600
TIKHMLFLQS ITKHADKLNK CADAKLCHKE ASMLGSSNYE RGSSWAVEVG GNLKVCSIMV  660
ENLNKNGQMV VEMMCEECSH FLEIAEAIRS LGLTILKGVT EARSDKTWIC FVVEGQNNRS  720
IHRMDILWSL VQILQPKNPM QQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235702.10.0PREDICTED: transcription factor bHLH155-like isoform X2
TrEMBLA0A251N1V50.0A0A251N1V5_PRUPE; Uncharacterized protein
STRINGXP_008235701.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7