PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235692.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 154aa    MW: 16947.3 Da    PI: 5.8257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235692.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-191969255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIrd +    + +r +lg+f ta+eAa+a+++a+ +++g
  XP_008235692.1 19 KYRGVRIRP-WGKFAAEIRDSTR---QgARLWLGTFNTAQEAARAYDRAAFSMRG 69
                    8********.**********322...24*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.6551977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-301978IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-221978IPR016177DNA-binding domain
PfamPF008473.2E-141969IPR001471AP2/ERF domain
SMARTSM003801.2E-321985IPR001471AP2/ERF domain
CDDcd000187.66E-271977No hitNo description
PRINTSPR003672.2E-102031IPR001471AP2/ERF domain
PRINTSPR003672.2E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEGGRSRGKA REEGQRDVKY RGVRIRPWGK FAAEIRDSTR QGARLWLGTF NTAQEAARAY  60
DRAAFSMRGP LAILNFPSEY GLPEADHSPS AASSSSSSSS SSSSSSSSNF SSSSTLHNNV  120
TTRTETGREI FEFEYLDDSV LEDLLDFDNK SKSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3361405114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235692.11e-108PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM5VGT09e-85M5VGT0_PRUPE; Uncharacterized protein
STRINGXP_008235692.11e-107(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]