PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235691.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 176aa    MW: 20116.2 Da    PI: 6.6903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235691.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-194092156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++y+G+r+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+  ++g+
  XP_008235691.1 40 TRYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 92
                    68********.**********98887..**********************988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-134092IPR001471AP2/ERF domain
CDDcd000186.03E-3140101No hitNo description
SMARTSM003805.0E-3541106IPR001471AP2/ERF domain
PROSITE profilePS5103224.8694199IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2341100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-3041100IPR001471AP2/ERF domain
PRINTSPR003672.1E-114253IPR001471AP2/ERF domain
PRINTSPR003672.1E-116581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSQPIFLPPN LNQDFLFLLN MEGKRVENQQ KEQTKVRDQT RYRGIRRRPW GKFAAEIRDP  60
SRNGARLWLG TFETAEEAAR AYDRAAFGFR GHLAILNFPN DYQYHNPSSS LISTSSSSSS  120
SSSSSPFSAA DIGKSTNFGR GQEEDEVIEF EYLDNMVLEE LLDTKENHHR QGKPTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-283815711114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235691.11e-129PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A251N1U92e-95A0A251N1U9_PRUPE; Uncharacterized protein
STRINGXP_008235691.11e-129(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-35ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]