PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235271.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 706aa    MW: 78636 Da    PI: 5.0624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235271.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14476523355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++h ++ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  XP_008235271.1 476 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 523
                     5899***********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-5610193IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.638473522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-19475536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-12476522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-19477540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-15477527No hitNo description
SMARTSM003538.2E-18479528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MAAPPSSSRL RSMLQASVQS VQWTYSLFWQ ICPQQGILVW SDGYYNGAIK TRKTVQPMEV  60
SAEEASLQRS QQLRELYDSL SAGETNQPPA RRPCASLSPE DLTESEWFYL MCVSFSFPPG  120
VGLPGKAYAR RQHVWLTGAN EVDSKTFSRA ILAKSARIQT VVCIPLLDGV VELGTTERVP  180
EDNALVQHVK TFFVDHNHPP PPKPALSEHS TSNPATSSDH PHFHSPHLPA MCTDPPLDAA  240
QEDEEEDEEE EDQEEDEEAE SDSEAETGRN GQPVAPGPNP PAVSAPAAEP SELMQLEMSE  300
DIRLGSPDDA SNNLDSDFHL LAVSQSRVNP ADQQRQADSY RAESARRWPS VQEPLSSGLQ  360
PPPQGPMALE ELTHDDTHYS ETVSTILQRQ VTRWTDSSST DHVAYSTQSA FAKWTTRVEH  420
HMLVPIEGTS QWLLKYILFS VPFLHTKYRD ENSPKSHEGD ASTRLRKGTP QDELSANHVM  480
AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLRKKIQDLE ARNVQMEDDQ  540
RSRSSGEIHR SNSMKELRSG LTVVERTRVG PPGSDKRKLR IVEGSGGAAV AKPKTMEESP  600
PPPPPPPPPP QPSPTPMVMG TSLEVSIIES DGLLELQCPY REGLLLDIMQ TLRELRIETT  660
VVQSSLNNGF FVAELRAKVK ENVNGKKISI TEVKRVINQI IPQSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-23101939192Transcription factor MYC3
4rqw_B5e-23101939192Transcription factor MYC3
4rs9_A5e-23101939192Transcription factor MYC3
4yz6_A5e-23101939192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481486ERRRRE
2482487RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2540060.0KT254006.1 Prunus cerasifera transcription factor bHLH3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235271.10.0PREDICTED: basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0N9QZR90.0A0A0N9QZR9_PRUAV; BHLH transcription factor
STRINGXP_008235271.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-102bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]