PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008235213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 208aa MW: 23868.4 Da PI: 4.8464 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.8 | 1.4e-25 | 1 | 53 | 8 | 59 |
EEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 8 rKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 rKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+ +Hnh+ XP_008235213.1 1 RKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTCSHNHP 53 9*******************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03106 | 3.8E-21 | 1 | 53 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-20 | 1 | 55 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-24 | 1 | 55 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.151 | 1 | 55 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-25 | 1 | 54 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
RKYGQKPIKG SPYPRGYYRC STSKGCSAKK QVERSKTDAS VLIITYTCSH NHPGPDVSTT 60 NLTQLQPSTE DHNLPALLPK QEEQEKEEQE KEPEKEKEEK QGKLEDHPAM KSDHEDHFHY 120 IQSPIRSSQN IMIEQEEDPF LEKTHVSSTL GFLLDEEPLS YSQLMSFSTP KSEENDFFDE 180 LEELPTFSSF PSFMRSNLSL ERIPSVPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-17 | 1 | 55 | 23 | 79 | Disease resistance protein RRS1 |
5w3x_D | 3e-17 | 1 | 55 | 23 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008235213.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ180306 | 2e-65 | DQ180306.1 Fragaria x ananassa clone PBCESTFXA1 SSR marker. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235213.1 | 1e-151 | PREDICTED: probable WRKY transcription factor 69, partial | ||||
TrEMBL | A0A314YPR1 | 1e-133 | A0A314YPR1_PRUYE; Putative WRKY transcription factor 69 isoform X1 | ||||
STRING | XP_008235213.1 | 1e-150 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9708 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 3e-28 | WRKY DNA-binding protein 35 |