PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235171.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 131aa    MW: 14382.7 Da    PI: 10.4832
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235171.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.8e-202558134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    C+ C+ttkTplWR gp g++tLCnaCG++yrk++
  XP_008235171.1 25 CTDCHTTKTPLWRGGPAGPRTLCNACGIKYRKRK 58
                    ********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.1911955IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-151970IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-142259No hitNo description
Gene3DG3DSA:3.30.50.106.4E-162359IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.73E-142459No hitNo description
PROSITE patternPS0034402550IPR000679Zinc finger, GATA-type
PfamPF003201.9E-172558IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDQRQKGSEA EHMNQSSIAP PSKSCTDCHT TKTPLWRGGP AGPRTLCNAC GIKYRKRKRA  60
LVGLNKGATG TERRKHKTIG APLKLGLKSM EREMVEMVFH FHKRKLKEEE EAAILLMALS  120
CSSGTGGAVY A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235171.12e-93PREDICTED: GATA transcription factor 23-like
TrEMBLM5VMQ31e-90M5VMQ3_PRUPE; Uncharacterized protein
STRINGXP_008235171.17e-93(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-19GATA transcription factor 16