PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235018.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YB

Protein Properties

Length: 176aa MW: 19827 Da PI: 6.8817

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235018.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.6	1.1e-55	38	133	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy+eplk yl++yrelege XP_008235018.1 38 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYRELEGE 132 89********************************************************************************************9 PP NF-YB 97 k 97 k XP_008235018.1 133 K 133 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-54	31	148	IPR009072	Histone-fold
SuperFamily	SSF47113	7.14E-41	40	145	IPR009072	Histone-fold
Pfam	PF00808	7.4E-28	43	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-19	71	89	No hit	No description
PROSITE pattern	PS00685	0	74	90	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.2E-19	90	108	No hit	No description
PRINTS	PR00615	1.2E-19	109	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MDNNIGNNSS EGEGFKYNFT GSSISSDHHH HQEDGVIKEQ DRLLPIANVG RIMKQILPPN 60 AKISKEAKET MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDICWALATL GFDDYAEPLK 120 RYLHRYRELE GEKAAHQGKA NSSEERNEVS PPRTSTSSPL KFNVLERGNS SLSRRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-45	37	128	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-45	37	128	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235018.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235018.1	1e-130	PREDICTED: nuclear transcription factor Y subunit B-5
Swissprot	O82248	1e-65	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	M5VPK9	1e-127	M5VPK9_PRUPE; Uncharacterized protein
STRING	XP_008235018.1	1e-130	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-68	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]