PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235007.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 472aa    MW: 50589.9 Da    PI: 8.919
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235007.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-114571127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++rtG+C yG rC+++H++
  XP_008235007.1 45 PGVPNCVYYMRTGFCGYGIRCRYNHPR 71
                    5789*********************96 PP
2zf-CCCH40.93.4e-1392116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_008235007.1  92 EPICQYYLKTGTCKFGASCKFHHPK 116
                     799********************96 PP
3zf-CCCH36.48.9e-12137162227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+++++tG+Ck+G +CkF+H++
  XP_008235007.1 137 GENECSYYLKTGQCKFGITCKFHHPQ 162
                     6789********************97 PP
4zf-CCCH36.96.1e-12293319127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG CkyG++C+++H++
  XP_008235007.1 293 PGEPECQYYLKTGDCKYGPSCRYHHPR 319
                     5799*********************96 PP
5zf-CCCH35.51.7e-11340364226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +  +C f++++G+Ck+G++CkF H+
  XP_008235007.1 340 GVQPCTFYLQNGHCKFGSTCKFDHP 364
                     6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3384472IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-64471IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-45071IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-789116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86389117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-692116IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1092116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-594116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342135163IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5135162IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9137162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.845292320IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6292319IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6296321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5298319IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666338366IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9340364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6340369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5342364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MELYGRSPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG  120
SLSRAPLNIY GLPLRPGENE CSYYLKTGQC KFGITCKFHH PQPAGTTIPS SAPQFYPSVQ  180
SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGTYGPVLIS PGVVPIQGWS PYSAPLSPVL  240
SPGAQPTVGA TSLYGVTQLS SPTHGLARPY TSVPSAVGPS SSSPSEQVFP ERPGEPECQY  300
YLKTGDCKYG PSCRYHHPRD RVVPRTNCLL SPIGLPLRPG VQPCTFYLQN GHCKFGSTCK  360
FDHPIGTMRY NPSASSLVDM PVTPYPVGSL LATLAPSSSS TDLRPELIST SKKDTYSTRV  420
PSSGNTSSSS VGLIFSQSGS VSLSDVQHTS QTSVPLSSSR STRQGGEVRR SS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235007.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM5VMU10.0M5VMU1_PRUPE; Uncharacterized protein
STRINGXP_008235007.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein