PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234982.1
Common NameARF11
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 708aa    MW: 78418.8 Da    PI: 6.0159
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234982.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.53.5e-25151252199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd++++g +++pk+ a+e+       ++++   ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv a++L +gD ++F   + +
  XP_008234982.1 151 FSKTLTPSDTSTHGGFSVPKRQADEClppldmsQQPP--VQELIARDLQGFEWHFRHIFRGQPKRHLLTSGWSTFVTAKRLVAGDACIFV--RGE 241
                     88*****************************744444..458************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+++r+
  XP_008234982.1 242 NGELRVGIRRA 252
                     999******97 PP
2Auxin_resp102.74.6e-34277359183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha st+++F+v+Y+P++s++ F++++++++k+ k+ +s+GmRf+m fe+++++e+rl+Gt+ +++d d +rWp S+Wr+Lk
  XP_008234982.1 277 AFHANSTGTMFTVYYRPWTSPAAFIIPCDQYMKSAKNDYSIGMRFRMCFEGDECAEKRLAGTILDIEDNDCIRWPSSEWRCLK 359
                     67999****************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-36142278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-40145263IPR015300DNA-binding pseudobarrel domain
CDDcd100177.88E-24149251No hitNo description
PROSITE profilePS5086313.197151253IPR003340B3 DNA binding domain
PfamPF023623.0E-22151252IPR003340B3 DNA binding domain
SMARTSM010191.2E-24151253IPR003340B3 DNA binding domain
PfamPF065073.9E-31277359IPR010525Auxin response factor
PfamPF023092.2E-10599694IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-10608687No hitNo description
PROSITE profilePS5174520.271610692IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MAPRTTAGVE GLGPTTVNIA ERESSGCSDG SAFPAAANKN KRGEKDDSYT RLWHACAGPN  60
VYVPRPGEKV FYFPQGHMEQ VEAYANEDGK MEMPIYNLPS KILCNVVCVL LKAEVHTDEV  120
FAQITLLPLT ELSLDEENNQ PVPQSTSTRS FSKTLTPSDT STHGGFSVPK RQADECLPPL  180
DMSQQPPVQE LIARDLQGFE WHFRHIFRGQ PKRHLLTSGW STFVTAKRLV AGDACIFVRG  240
ENGELRVGIR RANKKQDNAS TALISGHSMQ HGILASAFHA NSTGTMFTVY YRPWTSPAAF  300
IIPCDQYMKS AKNDYSIGMR FRMCFEGDEC AEKRLAGTIL DIEDNDCIRW PSSEWRCLKV  360
QWDASSDTNL HPERLSPWNI MPLQPNKRAH VPDLISPGFP NSATNGLLPI PVEYTPPRQK  420
KVFQGQEISD PPAYEPGTQK PPLLPQFIPP SNPDWNYTQL GLENNPLHDP LFQCPGSAIA  480
PSLTNQWPPI FNFGVLDSVA FRRSMSVPNI KSSGSQDSRA FKPRSEIEAP LVQPNSRGTT  540
MLFGVNIVTS HPELPSPQVV TSSELFSPCS ITPISQSSVS ETIQISETSK SVSGVLSAKQ  600
CKNCCSVTNR SCIKVLKYGA PVGRSVDLTR FDGYGELIAE LDQMFDFKGS LIDGSSGWQV  660
TYMDDEGDMM LIGDYLWHEF QSMVQKLYIC PKEEIDRLNP GLPNATSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1384338313355Auxin response factor 1
4ldw_A1e-1384338313355Auxin response factor 1
4ldw_B1e-1384338313355Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234982.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1853060.0KP185306.1 Prunus mume cultivar Daqiandi auxin response factor 11 (ARF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234982.10.0PREDICTED: auxin response factor 1-like
TrEMBLA0A0U2DB330.0A0A0U2DB33_PRUMU; Auxin response factor
STRINGXP_008234982.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-168auxin response factor 1