PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008234696.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 314aa MW: 34712.1 Da PI: 8.3956

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008234696.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2e-38	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+st tkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s XP_008234696.1 34 KDQALNCPRCNSTTTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNNKRS 94 7899*****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	20	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	35	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDTAHWPQGV GVVKSMEDSS PSRPILERRA RPQKDQALNC PRCNSTTTKF CYYNNYSLSQ 60 PRYFCKTCRR YWTEGGSLRN VPVGGGSRKN NKRSNSSSPS TSSAKKVAHD HHNHVTTNTP 120 HGNFPQHHDS ASQNPKIHFQ GQDLNLAYPP TDQEYDQVLP FSIDNKSQHQ LNPSSSTTTS 180 SHHHHHHLSA TELLKTGIAS RGLASFMPMG VPDHSNNNNN ITMFSTGFPM GVQEFKPSHG 240 LSFSLAGFES SGYGCLQGVQ EANNSHARLL FPTDEDLKQQ IPSTTNITTE FNQHTRGEGD 300 SGGYWNGMLG GGSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008234696.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008234696.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A251QSK8	0.0	A0A251QSK8_PRUPE; Uncharacterized protein
STRING	XP_008234696.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-47	Dof family protein