PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234673.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25374.5 Da    PI: 8.2608
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234673.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.2e-193387256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ ++ft+eq++ Le+ Fe ++++  +++ + A++lgL+ rqV +WFqNrRa++k
  XP_008234673.1 33 KNQRRFTDEQIRLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 87
                    56789*************************************************9 PP
2HD-ZIP_I/II122.91.6e-3934125293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ++rr+++eq++lLE+ Fe+++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L++ yd+l+++ e+L++e+++L  ++++
  XP_008234673.1  34 NQRRFTDEQIRLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEEKQSLLMQMEK 125
                     68************************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-192290IPR009057Homeodomain-like
PROSITE profilePS5007117.9452989IPR001356Homeobox domain
SMARTSM003892.2E-183293IPR001356Homeobox domain
PfamPF000466.2E-173387IPR001356Homeobox domain
CDDcd000866.74E-163390No hitNo description
Gene3DG3DSA:1.10.10.605.2E-193787IPR009057Homeodomain-like
PRINTSPR000311.2E-56069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000311.2E-56985IPR000047Helix-turn-helix motif
PfamPF021835.3E-1589129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEKTECSEAQ NFGSVTTSLE PQATAKRKKA KSKNQRRFTD EQIRLLESIF EADSKLEPRR  60
KVQVARELGL QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRA DYDNLASRFE SLKEEKQSLL  120
MQMEKLNELV GKPSQGLEGN IMADGSRLQE ELAPRGVIQS HKNNTSNDVG CHGDEIHELL  180
SMAHVDASSL SPQDWHRFDP SILFDQSRFT SSHWLNFWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18189RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1394970.0AF139497.1 Prunus armeniaca homeobox leucine zipper protein (HBLZP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234673.11e-163PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLQ9XH731e-156Q9XH73_PRUAR; Homeobox leucine zipper protein
STRINGXP_008234673.11e-162(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-49homeobox 7