PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234571.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 342aa    MW: 37914.4 Da    PI: 6.0645
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234571.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2786168271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_008234571.1  86 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsngvtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 168
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.1E-1302339IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.2E-4681173IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3485168IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-2587168IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.03E-2288169IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.04E-43173276IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.92E-42174285No hitNo description
SMARTSM011381.8E-73175337IPR014889Transcription factor DP, C-terminal
PfamPF087811.9E-41176307IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGTRSQQPSR ERADVDDDMA GQSVSMSGSV GSPSSRSEQT MATPAGDTNF LRLNHPDVHG  60
DDAGSQGAVG SKKKKRGQRA VAGDKSGRGL RQFSMKVCEK VESKGRTTYN EVADELVAEF  120
ADPSNGVTSP DQQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTSLNDIEEL  180
KTERLGLRNR IEKKASYLQE LEEQYVGLQN LIQRNEQLYH SGDALSGGVA LPFILVQTRP  240
HATVEVEISE DMQLVHFDFN STPFELHDDN YVLKAMKFCE RPQADDGTQN LTADGGEGCS  300
MSSMYQPQIS LPSMLNTPVR PPTSPPIPGI LKARVKHEHH GQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3579173193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234571.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-158DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A251QQ800.0A0A251QQ80_PRUPE; Uncharacterized protein
STRINGXP_008234571.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-151Transcription factor DP