PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008234395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 36762 Da PI: 6.4526 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181 | 3.1e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_008234395.1 7 VPPGFRFHPTDEELVDYYLRKKVSSRRIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 100 69****************************.9***************954555442556************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle XP_008234395.1 101 YS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 **.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-61 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-29 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVS SRRIDLDVIK DVDLYKIEPW DLQELCRIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKKIAS MGIKMSEHES PCWYDDQVSF 180 MPDLDSPNQN SNSNINMAPY HHLPYPCKKE LDHLPAFQVP HEHLFQLPLL GSPKLLQSSA 240 TGVSSSNSMA AHAYSIDINH ACTFQPSDQD PNFHGTVYGN NSNDDHSQAV DQLTDWRMLD 300 KFVASQLSQD DASNKGNSYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008234395.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008234395.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like isoform X2 | ||||
Swissprot | Q9FWX2 | 1e-129 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | M5X778 | 0.0 | M5X778_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234394.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-121 | NAC 007 |
Publications ? help Back to Top | |||
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