PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008234310.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 382aa MW: 39714.1 Da PI: 6.6878

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008234310.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.2	4.2e-36	85	155	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+pai ++tgt++++a ++ XP_008234310.1 85 AAKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPAIMQATGTGTIPAIAV 155 5799***********************************************************99988544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-29	89	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.754	90	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEPNQRQSLE ESNELEQQSN SSSNDNTTSA SDPSVADPPE KIFPLTAPTM KEELTDTVQE 60 LDEGSLPMGL IQVPVPTSSE KQVVAAKRSS KDRHTKVEGR GRRIRMPATC AARIFQLTRE 120 LGHKSDGETI RWLLEQAEPA IMQATGTGTI PAIAVSVGGT LKIPTTSPAR PNGEITEIPR 180 KRRKRGSNSE FVDVHEQSSV SSGLAPMSYG GGGGGGGAHG LVPMWQVGAT GAAGPFFMFP 240 NNGAVNPNQP QLWAVPAADA ATPIFNFQAR PISNFLSAFQ PGVHVVGGDV QLQASSGSIS 300 SGATSGSGGS CSSSLGPSLG SASGTRANKN TISTGSGTGA SAAAAAASAT TTQMLRDFSL 360 EIYDKRELQF MGANSQTPYS KP

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEPNQRQSLE ESNELEQQSN SSSNDNTTSA SDPSVADPPE KIFPLTAPTM KEELTDTVQE  60
LDEGSLPMGL IQVPVPTSSE KQVVAAKRSS KDRHTKVEGR GRRIRMPATC AARIFQLTRE  120
LGHKSDGETI RWLLEQAEPA IMQATGTGTI PAIAVSVGGT LKIPTTSPAR PNGEITEIPR  180
KRRKRGSNSE FVDVHEQSSV SSGLAPMSYG GGGGGGGAHG LVPMWQVGAT GAAGPFFMFP  240
NNGAVNPNQP QLWAVPAADA ATPIFNFQAR PISNFLSAFQ PGVHVVGGDV QLQASSGSIS  300
SGATSGSGGS CSSSLGPSLG SASGTRANKN TISTGSGTGA SAAAAAASAT TTQMLRDFSL  360
EIYDKRELQF MGANSQTPYS KP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008234310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008234310.1	0.0	PREDICTED: transcription factor TCP19
Swissprot	Q9LT89	2e-62	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A314UY64	0.0	A0A314UY64_PRUYE; Transcription factor TCP19
STRING	XP_008234310.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	7e-64	TCP family protein