PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234297.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 261aa    MW: 28076.4 Da    PI: 4.77
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234297.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.7e-1697146155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+G+r  +++g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+ +l+g
  XP_008234297.1  97 PVYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYAKPEMAAAAYDVAAIALKG 146
                     68****6..678*********843...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-997146IPR001471AP2/ERF domain
SMARTSM003803.7E-2698160IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1798156IPR016177DNA-binding domain
PROSITE profilePS5103219.04598154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2598155IPR001471AP2/ERF domain
CDDcd000182.99E-1599156No hitNo description
PRINTSPR003676.6E-699110IPR001471AP2/ERF domain
PRINTSPR003676.6E-6136156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MTGPWSRIHK YIYDIYIIHA QLVCLVDILF MADPYRNVPK SDQPTPTSNS SNPAFILLPP  60
PAPPDPTPPA AHDRDCSSSP RPGPSGASTS SSPRGHPVYR GIRSRSGKWV SEIREPRKTT  120
RIWLGTYAKP EMAAAAYDVA AIALKGPDTA LNFPNSILTY PIPASSAASD IRAAAARAAQ  180
SRAEMISAGE SGGRSEPGGV KNEEGRVGQE EEEEEFMDEE ALLNMPNLLV DMAEGMLVSP  240
PRISSEDSPG NSDGGENLWS Y
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234297.10.0PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ901e-49ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A251QN301e-160A0A251QN30_PRUPE; Uncharacterized protein
STRINGXP_008234297.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-34ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]