PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234097.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 348aa    MW: 38727.7 Da    PI: 5.4679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234097.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2249.9e-08140162123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  XP_008234097.1 140 HYCEICGKGFKRDANLRMHMRAH 162
                     68*******************99 PP
2zf-C2H210.70.0017226249123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ ksFs   +Lk+H++ +
  XP_008234097.1 226 YSCNRCNkKSFSVVADLKSHLKHC 249
                     99*******************977 PP
3zf-C2H213.30.00024257273521
                     TTTEEESSHHHHHHHHH CS
         zf-C2H2   5 dCgksFsrksnLkrHir 21 
                      Cg+sFsrks L  H+ 
  XP_008234097.1 257 TCGTSFSRKSKLFGHMA 273
                     6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-6137163No hitNo description
Gene3DG3DSA:3.30.160.605.2E-6140162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884140167IPR007087Zinc finger, C2H2
PfamPF128745.3E-4141160No hitNo description
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SMARTSM0035534188221IPR015880Zinc finger, C2H2-like
SMARTSM0035513226248IPR015880Zinc finger, C2H2-like
SMARTSM00355230254278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSFAGQLFNI PAVCSVAPPV EDPDPEVPLR NLSMVRTRMD SLQCFLTESI NANALISKDQ  60
MDMVSAGIAS AIRETISNGA ALLACSQNLG DTSDPTRTPA ANNEAATEVK KEEENDFQND  120
DAEGEIVEVD AMELLAEHIH YCEICGKGFK RDANLRMHMR AHGNRFKTPE ALAKPDKNPA  180
EPSRKTRFSC PYIGCNRNKG HVKFRALKSV ICVKNHFKRS HCPKMYSCNR CNKKSFSVVA  240
DLKSHLKHCG EARWRCTCGT SFSRKSKLFG HMALFEGHMP AVEDEKSVKA AAAMDQDEDE  300
EEEVEENTTS FKGREMGSNF YEDVEFSELL GGFGSIDGYF LEDMLVDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234097.10.0PREDICTED: zinc finger protein STOP1 homolog
RefseqXP_016647116.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A314YG960.0A0A314YG96_PRUYE; Zinc finger protein STOP1 homolog
STRINGXP_008234097.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.34e-75C2H2 family protein