PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008233638.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 668aa MW: 75378.9 Da PI: 5.2874

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008233638.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	400.5	1.8e-122	294	665	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+av+++d + ++lL+++++++sp gd+mqRla+yf+ +L+ar+a+ ++ +y+ l ++++s +++l+a++l+ +++P+ k+s+ XP_008233638.1 294 LRTLLTLCAQAVAANDERTGNELLKQIRQHSSPMGDAMQRLAHYFADGLEARMAGYGTPIYRDLITKPAS---AADVLKAYNLYLDACPFKKLSN 385 5789**********************************************************999999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N++I++ +e+++r+HiiDf+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+ +vpfefn+ +a+++++ XP_008233638.1 386 FFSNKTIMNVAEKATRLHIIDFGIHYGFQWPSLIQNLSSRPGGPPKLRITGIDLPQPGfrPAEMVEETGRRLANYAETNKVPFEFNA-IAQTWDT 479 ******************************************************99*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++++E+l+Vn+v++l rllde+v +es++d vLkl+++++P+v++++ + +++++ Fl+rf eal ++s++fd+le+++p+++ er+ XP_008233638.1 480 VQIEDLKIDRDEVLVVNSVHRLRRLLDETVMVESPKDMVLKLIRKINPDVFTLAIVNGSYSAPFFLTRFREALFHFSTMFDMLETNAPHDAPERM 574 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere++gr+++nv+aceg+er+er et+++W+ r +aGF+++pl+++++k ak l+ ++ + + ++e+s++l+lgWk+r +++S+Wr XP_008233638.1 575 LIEREIFGRQAMNVIACEGSERIERPETYKQWQVRNLRAGFTQLPLNQEIVKIAKDRLQSCYHKDFVIDEDSQWLLLGWKGRIGYALSSWR 665 **********************************************************889***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.794	268	645	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-120	294	665	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MYPDEYSPEE SDFSDVVLEY ISQMLMEEDT EEKTEMYQES AALQAAEQSY YELLQGNSSS 60 PPCDLIHYAD HNHESNPLHC SYNSTTPGNT RSIRDCDLLE YKSLHVASQS TSLPFHAPSN 120 ETGNVVDGFA DSPVSILRGP EFSNETELVM QFKRGFEEAS RFLPNANCLN VDFESNTLSL 180 KEGKAEAIGM VVEVDKKNEY SSDGSRGKKN PYHEDVSLEV GKSNKLSAVY TESTVSSEMF 240 DRHLLNCGQG ESALRETLQN RTIKIVQQNG QSKGSSGGKA RGKRQGGEKD VVDLRTLLTL 300 CAQAVAANDE RTGNELLKQI RQHSSPMGDA MQRLAHYFAD GLEARMAGYG TPIYRDLITK 360 PASAADVLKA YNLYLDACPF KKLSNFFSNK TIMNVAEKAT RLHIIDFGIH YGFQWPSLIQ 420 NLSSRPGGPP KLRITGIDLP QPGFRPAEMV EETGRRLANY AETNKVPFEF NAIAQTWDTV 480 QIEDLKIDRD EVLVVNSVHR LRRLLDETVM VESPKDMVLK LIRKINPDVF TLAIVNGSYS 540 APFFLTRFRE ALFHFSTMFD MLETNAPHDA PERMLIEREI FGRQAMNVIA CEGSERIERP 600 ETYKQWQVRN LRAGFTQLPL NQEIVKIAKD RLQSCYHKDF VIDEDSQWLL LGWKGRIGYA 660 LSSWRAAC

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MYPDEYSPEE SDFSDVVLEY ISQMLMEEDT EEKTEMYQES AALQAAEQSY YELLQGNSSS  60
PPCDLIHYAD HNHESNPLHC SYNSTTPGNT RSIRDCDLLE YKSLHVASQS TSLPFHAPSN  120
ETGNVVDGFA DSPVSILRGP EFSNETELVM QFKRGFEEAS RFLPNANCLN VDFESNTLSL  180
KEGKAEAIGM VVEVDKKNEY SSDGSRGKKN PYHEDVSLEV GKSNKLSAVY TESTVSSEMF  240
DRHLLNCGQG ESALRETLQN RTIKIVQQNG QSKGSSGGKA RGKRQGGEKD VVDLRTLLTL  300
CAQAVAANDE RTGNELLKQI RQHSSPMGDA MQRLAHYFAD GLEARMAGYG TPIYRDLITK  360
PASAADVLKA YNLYLDACPF KKLSNFFSNK TIMNVAEKAT RLHIIDFGIH YGFQWPSLIQ  420
NLSSRPGGPP KLRITGIDLP QPGFRPAEMV EETGRRLANY AETNKVPFEF NAIAQTWDTV  480
QIEDLKIDRD EVLVVNSVHR LRRLLDETVM VESPKDMVLK LIRKINPDVF TLAIVNGSYS  540
APFFLTRFRE ALFHFSTMFD MLETNAPHDA PERMLIEREI FGRQAMNVIA CEGSERIERP  600
ETYKQWQVRN LRAGFTQLPL NQEIVKIAKD RLQSCYHKDF VIDEDSQWLL LGWKGRIGYA  660
LSSWRAAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-50	294	665	5	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008233638.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008233638.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M5X426	0.0	M5X426_PRUPE; Uncharacterized protein
STRING	XP_008233638.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]