PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008233552.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YB

Protein Properties

Length: 177aa MW: 19690.5 Da PI: 7.6687

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008233552.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	91.5	8.3e-29	1	57	17	73
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalat 73 mkk lP+nakisk+aketvqecv efisfvt++as kcqrekrktingddl wa+ t XP_008233552.1 1 MKKSLPSNAKISKEAKETVQECVPEFISFVTGKASYKCQREKRKTINGDDLPWAMKT 57 9******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.53E-20	1	93	IPR009072	Histone-fold
Pfam	PF00808	8.9E-19	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.0E-25	1	103	IPR009072	Histone-fold
PRINTS	PR00615	3.3E-8	19	37	No hit	No description
PRINTS	PR00615	3.3E-8	38	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MKKSLPSNAK ISKEAKETVQ ECVPEFISFV TGKASYKCQR EKRKTINGDD LPWAMKTTSR 60 STEAQGGVAS MTRQEEDPSQ QQQQHHNTSN TNLQHGSNND QTNAVLNANN ISMSTSKVDL 120 FNGGFYFLEG QQQQQQVTQN YNLVSAGTYN LSRINESGDV NGNRDLATHH LHNGIGW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-21	1	55	17	71	Transcription factor HapC (Eurofung)
4g92_B	2e-21	1	55	17	71	Transcription factor HapC (Eurofung)
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008233552.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008233552.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-4-like
TrEMBL	A0A251NRW7	3e-98	A0A251NRW7_PRUPE; Uncharacterized protein
STRING	XP_008233552.1	1e-131	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-30	nuclear factor Y, subunit B3