PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233293.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 244aa    MW: 28499.3 Da    PI: 8.5986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233293.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll   ++ +G g W+ ++ + g++R++k+c++rw++yl
   XP_008233293.1  9 KGAWTKEEDDLLRLFIQNHGEGKWNQVSLHSGLKRCRKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding42.91.1e-1362105146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w +
   XP_008233293.1  62 RGHFAEDEIDLILRLHKLLGNR-WSLIAGRLP-GRTGNDVKNFWKT 105
                      678899****************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.263456IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-21558IPR009057Homeodomain-like
SuperFamilySSF466893.04E-276103IPR009057Homeodomain-like
SMARTSM007175.4E-14858IPR001005SANT/Myb domain
PfamPF002497.3E-15956IPR001005SANT/Myb domain
CDDcd001674.71E-91156No hitNo description
PROSITE profilePS5129422.89957111IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2259111IPR009057Homeodomain-like
SMARTSM007173.7E-1361109IPR001005SANT/Myb domain
PfamPF002491.8E-1262105IPR001005SANT/Myb domain
CDDcd001673.67E-867107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDSSSGVRKG AWTKEEDDLL RLFIQNHGEG KWNQVSLHSG LKRCRKSCRL RWLNYLKPSI  60
KRGHFAEDEI DLILRLHKLL GNRWSLIAGR LPGRTGNDVK NFWKTRLSRK MTSVVVEKVK  120
EKSQETKKDI AVRPQSRRLS KTSHYLSGHK TVTSRHNQPE ENFSKLPILP SSPIEDEADW  180
WETFLEDEDN VKRTKCSFLV LEEDHLTNGC VEDLAEWTRT DFRYLEDCPC WIGSSDMDLW  240
NLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-22911127128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233293.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9999850.0KF999985.1 Prunus persica MYB104 mRNA, complete cds.
GenBankKP7722840.0KP772284.1 Prunus cerasifera MYB10.4 transcription factor (MYB10.4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233293.11e-180PREDICTED: transcription factor MYB1-like isoform X1
SwissprotQ9FNV91e-51MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0K1TPI01e-163A0A0K1TPI0_9ROSA; MYB10.4 transcription factor
TrEMBLW8QQ691e-163W8QQ69_PRUPE; MYB104
STRINGXP_008233293.11e-180(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]