PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008233242.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 25280.9 Da PI: 5.8404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.8 | 6.9e-43 | 3 | 131 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevl 93 GfrF Pt+eelv++yL+kk ++k+++++++i+e+di+k+ePwdLp + ++ ++++fFs+rd ky + r+nr+t +g+Wk tgk++ ++ XP_008233242.1 3 CGFRFCPTEEELVNHYLRKKKQDKDFKVDHIIPEIDICKYEPWDLPGlftEPESPYQDMFFFSPRDYKYINnRARTNRVTGRGFWKITGKERVIK 97 6***************************999***************6233333344588**********96378******************999 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g kktL+fy+gr + ++t+Wvmhey l XP_008233242.1 98 G-ARGSIGRKKTLIFYEGRVTQCNRTNWVMHEYYL 131 9.7779***************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.009 | 1 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-46 | 3 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-24 | 4 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDCGFRFCPT EEELVNHYLR KKKQDKDFKV DHIIPEIDIC KYEPWDLPGL FTEPESPYQD 60 MFFFSPRDYK YINNRARTNR VTGRGFWKIT GKERVIKGAR GSIGRKKTLI FYEGRVTQCN 120 RTNWVMHEYY LCEDEAIPNP KLAQQRDFVL CRLRKNAVKN VTSICAVAEP AYAEWLGISE 180 EECPQPEELE LVFPALQLQD NISEEMEFEI FSKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-35 | 4 | 155 | 20 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-35 | 4 | 155 | 20 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-35 | 4 | 155 | 20 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-35 | 4 | 155 | 20 | 164 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-35 | 4 | 155 | 20 | 164 | NAC domain-containing protein 19 |
4dul_B | 9e-35 | 4 | 155 | 20 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008233242.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008233242.1 | 1e-160 | PREDICTED: NAC domain-containing protein 14-like | ||||
Swissprot | B5X570 | 2e-42 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
TrEMBL | A0A251QIW0 | 1e-140 | A0A251QIW0_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251QJ37 | 1e-140 | A0A251QJ37_PRUPE; Uncharacterized protein | ||||
STRING | XP_008233242.1 | 1e-159 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13710 | 5 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-44 | NAC 014 |