PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233081.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 241aa    MW: 27755.6 Da    PI: 4.6456
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233081.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-203892256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +f++eq++ Le+lFe+++ +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  XP_008233081.1 38 KNKKRFSDEQIRSLESLFESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWK 92
                    67789*************************************************9 PP
2HD-ZIP_I/II121.54.3e-3939130293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+r+s+eq+++LE+ Fe+e++Lep++K++la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L  +l++
  XP_008233081.1  39 NKKRFSDEQIRSLESLFESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNNLASKFEALKKEKQALVIQLQK 130
                     79************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.9E-202196IPR009057Homeodomain-like
PROSITE profilePS5007118.353494IPR001356Homeobox domain
SMARTSM003896.2E-173698IPR001356Homeobox domain
PfamPF000462.4E-173892IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-2039101IPR009057Homeodomain-like
CDDcd000864.12E-154395No hitNo description
PRINTSPR000316.3E-66574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000316.3E-67490IPR000047Helix-turn-helix motif
PfamPF021831.3E-1694135IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MMLDQIEYSS PTAEDDHEGF SCMSSLEAAG SVKRKNSKNK KRFSDEQIRS LESLFESESR  60
LEPRKKMQLA KELGLQPRQV AIWFQNKRAR WKSKQLERDY SILRANYNNL ASKFEALKKE  120
KQALVIQLQK LNDLMRERPE EERQSCGESD NGDASRSESD QVKLNHLSLE KSEQGGRGVL  180
SDDDSSIKAE YFGLEEEPNL VSLVESADGS LTSTEDWGRL NSDGFFDESI SSDYQWWDFW  240
S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233081.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233081.11e-175PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468972e-67ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLM5X0281e-172M5X028_PRUPE; Uncharacterized protein
STRINGXP_008233081.11e-174(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-55homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]