PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232742.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 828aa    MW: 90119.1 Da    PI: 6.3958
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232742.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.48e-21123178156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  XP_008232742.1 123 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 178
                     688999***********************************************999 PP
2START206.79.1e-653305541206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+W +s     e +n +e++++f++  +     + +ea+r++g+v+ ++  lve+l++++ +W e+++    + +t+
  XP_008232742.1 330 ELALAAMDELVKLAQTDEPLWLRSLeggrEVLNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMESN-RWLEMFPclvaRTSTT 423
                     5899************************99***********9999899999***************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++ +  + ++ +++lpSg+++++++ng+skvtwveh+
  XP_008232742.1 424 DVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRDTSGAPTFMNCRRLPSGCVVQDMPNGYSKVTWVEHA 518
                     ************************************************************999******************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++++h+l+r++++sg+ +ga++wvatlqrqce+
  XP_008232742.1 519 EYDESQVHQLYRPMLSSGMGFGAQRWVATLQRQCEC 554
                     **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.23E-21103180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-22107180IPR009057Homeodomain-like
PROSITE profilePS5007117.524120180IPR001356Homeobox domain
SMARTSM003895.7E-17121184IPR001356Homeobox domain
CDDcd000862.25E-18123180No hitNo description
PfamPF000462.2E-18123178IPR001356Homeobox domain
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PROSITE profilePS5084843.985321557IPR002913START domain
SuperFamilySSF559618.79E-33322554No hitNo description
CDDcd088752.60E-125325553No hitNo description
SMARTSM002348.6E-47330554IPR002913START domain
PfamPF018528.8E-57330554IPR002913START domain
SuperFamilySSF559611.73E-23575753No hitNo description
SuperFamilySSF559611.73E-23782815No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MSFGGFLDNS TGSGGGARIV ADISYNNTSS STHSNNMPSS ALAQPRLVTQ SLTKSMFNSP  60
GLSLALTNAD GQGDVTRMAE NFETHVGRRS REEEHESRSG SDNMDGGSGD DQDAADNTNP  120
RKKKRYHRHT PQQIQELEAL FKECPHPDEK QRLELSRRLC LETRQVKFWF QNRRTQMKTQ  180
LERHENSLLR QENDKLRAEN MSIRDAMRNP ICSNCGGPAI IGEISLEEQH LRIENARLKD  240
ELDRVCALAG KFLGRPISSL ATSMGPPLPS STLELGVGSN GFGGLSSVAT SMPVGPDFGG  300
GIGSAMSVVP HSRPSATGLD RSMERSMFLE LALAAMDELV KLAQTDEPLW LRSLEGGREV  360
LNHEEYMRSF TPCIGLKPNG FVTEASRETG MVIINSLALV ETLMESNRWL EMFPCLVART  420
STTDVISSGM GGTRNGALQL MHAELQVLSP LVPVREVNFL RFCKQHAEGV WAVVDVSVDT  480
IRDTSGAPTF MNCRRLPSGC VVQDMPNGYS KVTWVEHAEY DESQVHQLYR PMLSSGMGFG  540
AQRWVATLQR QCECLAILMS SSVPTRDHTA ITSSGRRSML KLAQRMTDNF CAGVCASTVH  600
KWNKLNARNV DEDVRVMTRE SLDDPGEPPG IVLSAATSVW LPVSPQRLFD FLRDERLRSE  660
WDILSNGGPM QEMAHIAKGQ DPGNCVSLLR ARAMNANQSS MLILQETCID AAGGLVVYAP  720
VDIPAMHVVM NGGDSAYVAL LPSGFAIVPD GPGSRGPMTV KGGGHGSNNG GGGEDATHRV  780
SGSLLTMTFQ ILVNSLPSAK LTVESVETVN NLISCTVQKI KAALHCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232742.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLM5XQZ70.0M5XQZ7_PRUPE; Uncharacterized protein
STRINGXP_008232741.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]