PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232566.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 456aa    MW: 49106.6 Da    PI: 7.5864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232566.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.3e-15279324555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  XP_008232566.1 279 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKNLQ 324
                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.19E-18272335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.625274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-12279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-17279328No hitNo description
Gene3DG3DSA:4.10.280.101.0E-17279333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-17280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNQCVPSWDL DDISTPPAPR LSLRSSTPSA DVPMLDYEVA ELTWENGQVA MHGLGLPRLQ  60
AKPSLTTAKY TTWDKPRASG TLESIVNQAT STLAPPSKPP FNSSGGGANG ELVSWFDHHR  120
AAAVRSTAVT PSTTMTMDAL VPCRNQSDNS SNHMMESMSM PVVISGSDVV GCSTRVESCS  180
GATGAATQDD DTKLSGKHGS LSSVPETPEW SSRSQSVSGS ATFGMDNQPV TLDSTKASDH  240
DSVCHSRPQR EAGDEDDRKK RSTGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL  300
VPNSSKTDKA SMLDEVIEYL KNLQAQIQMM SRMNMPAMML PMAMQQQLQM SMMAAAPRNM  360
GMGMGMGMGM GMGMDMNTMV RPNIPGISPV LHPTAFMPMA SWDGSGGDRS ASATVMPDPL  420
SAFLACQSQP MTMDAYSMMA AMYQQFHQPP ASSSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287ERKRRD
2283288RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232566.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894230.0KP689423.1 Prunus pseudocerasus isolate Unigene11342 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232566.10.0PREDICTED: transcription factor UNE10
SwissprotQ8GZ381e-106UNE10_ARATH; Transcription factor UNE10
TrEMBLM5X1360.0M5X136_PRUPE; Uncharacterized protein
STRINGXP_008232566.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]