PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232554.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 431aa    MW: 47423.2 Da    PI: 8.2623
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232554.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.7e-40183260178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC++ l +akeyhrrhkvCe+hska++v+v g+eqrfCqqCsrfh +sefDe+krsCrrrLa+hnerrrk+++
  XP_008232554.1 183 RCQVEGCHVPLMNAKEYHRRHKVCEMHSKASKVTVLGQEQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSH 260
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33180245IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18181258IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-38182262IPR004333Transcription factor, SBP-box
PfamPF031101.9E-31184257IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEIGGNMNMN MLGHDHNNNS HISSSSRGQN GNNNTYLTNW DIWGGATSTS AAATNNNSFY  60
SPAAVTVAAT AGASSSATCS EASPGCHAFI MGHPLQQQHS SFYGGGARSH YHPDPHLMCL  120
KLGKRHYFED HARAHAHAHA LDDRHVAGLP VGVMSKRGRG GAAAAAQQLY GSGATLALKV  180
VPRCQVEGCH VPLMNAKEYH RRHKVCEMHS KASKVTVLGQ EQRFCQQCSR FHVVSEFDES  240
KRSCRRRLAG HNERRRKSSH DSLSRISSQE KGRFGYLSTP TGRALSLLSS RNTGFDSWVS  300
PSDLSSRSSA ALRELIAENR AAVLARQLIN SSEDRNWDSS SHNNHATEDL FCDHGQSWSN  360
SVEPQQHQMF SDHNYQHGWD RFHEGSGAHL TLDLRQAPSP AYGFLPERGK TKAEEDQECD  420
LWNSFHGASV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29171257184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232554.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A251QGK40.0A0A251QGK4_PRUPE; Uncharacterized protein
STRINGXP_008232554.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-35squamosa promoter binding protein-like 9