PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232356.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 239aa    MW: 27200.5 Da    PI: 9.1879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232356.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32160218159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  XP_008232356.1 160 LDDGYKWRKYGQKVVKNTQHPRSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHVHS 218
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-34145218IPR003657WRKY domain
SuperFamilySSF1182907.45E-29152219IPR003657WRKY domain
PROSITE profilePS5081129.115155220IPR003657WRKY domain
SMARTSM007744.0E-37160219IPR003657WRKY domain
PfamPF031063.0E-25161217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MASTTSQAML SQQQGLFENE EGSNAQMGFF SIPPNLNFSS LGSLKAFGSS SIPSSTNLSE  60
TLLPSLTPLK HREDHNITTS SDFGGSQLLS LQRSTANLWA WGEVSDDHEC LSSKRSNGGD  120
DRHHHHMGVS AMKMKKMKAI RRKVREPRFC FKTMSEVDVL DDGYKWRKYG QKVVKNTQHP  180
RSYYRCTMDN CRVKKRVERL AEDPRMVITT YEGRHVHSPS HDLDQDSQQA SSHLNNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26152217974Probable WRKY transcription factor 4
2lex_A1e-26152217974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232356.10.0PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB79e-67WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A251NRK81e-179A0A251NRK8_PRUPE; Uncharacterized protein
STRINGXP_008232356.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-61WRKY DNA-binding protein 13