PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008232272.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 616aa MW: 66803.8 Da PI: 5.1107 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 73.2 | 3.6e-23 | 107 | 160 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++Wt++L +rF+eav + G ekA+Pk+ile+m+v+gLt+++++SHLQkYR+ XP_008232272.1 107 KHKVEWTSQLQARFLEAVYCI-GLEKAVPKRILEVMNVEGLTRANIASHLQKYRM 160 6799*****************.********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 7.6E-5 | 18 | 90 | No hit | No description |
SuperFamily | SSF46689 | 3.05E-16 | 104 | 164 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-24 | 106 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 107 | 160 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MYVCVSIVFL IGLNLDAVVS TDNRESTILA ALEHGATHYI VKPVCFSDVR NLWQFVVGGN 60 EGTRNPHIVV EQIGCVSGES LSSSNGDSNS KRKRPSQGGK DFISIKKHKV EWTSQLQARF 120 LEAVYCIGLE KAVPKRILEV MNVEGLTRAN IASHLQKYRM FLRKVAGRIA VSKLPVDLPQ 180 HTRHPLLNQN IPGKKPATPD KPISLRDNFE LSVKPNASNL SLLGRRPNDQ EATSSGSSPQ 240 SGYITGHPYL PYDTSKFANL PLMSSTPNAS QPAASCSGFQ SNNALGNLST TNPSPITNPS 300 PKLISTDIPY SFGRNSANGV HIGTNPVQMY QQKAQETPQP FTTTGNGNSN NDSWNNSNVM 360 TSYTNNSYGT GMQMTITSTA GGGRLAGHMA PTQTVFNNVG WDSNGVNNNC GDLVINNGTQ 420 NDDQNRNVLQ VENVVFGYDF PQKESSSSLG FSGSSSSQFS PILAEGNNAG RGNVNVSELD 480 QIVQQCSTLF SSSNNSSQVT VVDSSSSSTE ISSSYQKDND DAFNLSVLLL NELHLESIKN 540 DQVKGKQAID SDKDTDIDFD LFLNENHFGT VNDDDKHNGD LVDLKFDGDG DGLNMASPEN 600 LSLDEDWENI VESLFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-17 | 106 | 166 | 4 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008232272.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008232272.1 | 0.0 | PREDICTED: two-component response regulator ORR21-like | ||||
TrEMBL | A0A314Y8J0 | 0.0 | A0A314Y8J0_PRUYE; Two-component response regulator ORR21-like | ||||
STRING | XP_008232272.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27571 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 3e-26 | response regulator 2 |