PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008231782.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 490aa MW: 54219.7 Da PI: 7.6125

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008231782.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	106.6	1.4e-33	111	171	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +ek l+cprC+s +tkfCy+nnys+ qPr+fCk+CrryWt+GG++rn+P+G+ r +nk+ss XP_008231782.1 111 PEKVLPCPRCNSLKTKFCYFNNYSVYQPRHFCKSCRRYWTAGGTIRNLPLGTRRHRNKHSS 171 78999****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-23	100	168	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-28	113	169	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.534	115	169	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	117	153	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MSAVRDPAIK LFGRNILVPE RQIPDMSVHN SNEECWVADM PKAAMSECRE MEDPSVKVSC 60 KQDQFFELDK GSENNHHGQI LENEGEVDCN PEEDCIASDT DEGKEKSFTK PEKVLPCPRC 120 NSLKTKFCYF NNYSVYQPRH FCKSCRRYWT AGGTIRNLPL GTRRHRNKHS SSQYQVVGEP 180 SAVPVTQGDT LNFVGQQHLL PVQLPASPKP VNGMREVLNS GTDTVLVESI ATALNHKDQK 240 RSSKDGSAAA GDNSEEPSSS SSSLTATTSQ QNACLGKEME QVDLPRYRND YNLTYTEQYF 300 PVPQWTENPS WGMMMFGPHS NNPNPSHMGS LPMVTVPGFC IPSFIFPIAP SSYQGYMPSL 360 DARKWNAQLV GSDGSLSPSS SNGNSRCSGN SLPRSGKYSR DANVQAGIKT KQCLWVPKTL 420 RIDDPDEAAK SSIWSTLCIK PDKNAPILRG GIFKAFQKKS DTKSQTLNAD RVLQANPAAH 480 SHSQLFQVTN

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MSAVRDPAIK LFGRNILVPE RQIPDMSVHN SNEECWVADM PKAAMSECRE MEDPSVKVSC  60
KQDQFFELDK GSENNHHGQI LENEGEVDCN PEEDCIASDT DEGKEKSFTK PEKVLPCPRC  120
NSLKTKFCYF NNYSVYQPRH FCKSCRRYWT AGGTIRNLPL GTRRHRNKHS SSQYQVVGEP  180
SAVPVTQGDT LNFVGQQHLL PVQLPASPKP VNGMREVLNS GTDTVLVESI ATALNHKDQK  240
RSSKDGSAAA GDNSEEPSSS SSSLTATTSQ QNACLGKEME QVDLPRYRND YNLTYTEQYF  300
PVPQWTENPS WGMMMFGPHS NNPNPSHMGS LPMVTVPGFC IPSFIFPIAP SSYQGYMPSL  360
DARKWNAQLV GSDGSLSPSS SNGNSRCSGN SLPRSGKYSR DANVQAGIKT KQCLWVPKTL  420
RIDDPDEAAK SSIWSTLCIK PDKNAPILRG GIFKAFQKKS DTKSQTLNAD RVLQANPAAH  480
SHSQLFQVTN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008231782.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008231782.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A498JG47	0.0	A0A498JG47_MALDO; Uncharacterized protein
STRING	XP_008231782.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	8e-36	cycling DOF factor 3