PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231670.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 304aa    MW: 31958.8 Da    PI: 8.3825
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231670.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702172.32.4e-531182643154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                     s+ ++C+dCGn+akk+C++ RCRtCC+ rg+dC+thvkstWvpaa+rrerq   + a           +  +      ++ ++  +  ++s++++
  XP_008231670.1 118 SKMKACKDCGNKAKKGCEYGRCRTCCRGRGYDCSTHVKSTWVPAARRRERQMGVTVAVPGVGGGGGGGEGSSGS----SSVAKRPRVVVPSQNAN 208
                     56679*********************************************998888876665544332222222....22333333444445444 PP

          DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++ ++slP++v+++avfrc rv+++++g +elaYq++v+i+Ghvf+G+Lyd+G+++
  XP_008231670.1 209 ANI-KQSLPDKVRAPAVFRCHRVTAISNGAAELAYQATVKISGHVFQGLLYDHGVDK 264
                     444.456************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-53121263IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.2E-24123164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-24215262IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MLGLRDILLI APTPSSMHQQ NQPISSDLPL PSSTTLGVGL GIFPLLTATP CAPHAPTTAE  60
VNSDSSHFWG LRRCQELNPS KQDMLNFGNH GAQNEQVVEC EGHNNNNENE GGGGGESSKM  120
KACKDCGNKA KKGCEYGRCR TCCRGRGYDC STHVKSTWVP AARRRERQMG VTVAVPGVGG  180
GGGGGEGSSG SSSVAKRPRV VVPSQNANAN IKQSLPDKVR APAVFRCHRV TAISNGAAEL  240
AYQATVKISG HVFQGLLYDH GVDKNNAFPC ISPSHLETDT NQRNGDSAST PPLPPATACL  300
TSTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231670.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A251QAH00.0A0A251QAH0_PRUPE; Uncharacterized protein
TrEMBLA0A251QAI70.0A0A251QAI7_PRUPE; Uncharacterized protein
STRINGXP_008231670.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.25e-33Lateral root primordium (LRP) protein-related