PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231095.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 389aa    MW: 42991.4 Da    PI: 8.2195
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231095.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.41.2e-39115191278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C vegC++dls ++eyhrrh+vCe hsk+pvv+v+g+++rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++
  XP_008231095.1 115 CLVEGCKTDLSLCREYHRRHRVCELHSKTPVVTVRGEQKRFCQQCSRFHSLVEFDEVKRSCRKRLNGHNQRRRKPKP 191
                     **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.5E-31108176IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.052112189IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-36113194IPR004333Transcription factor, SBP-box
PfamPF031104.8E-29115188IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEWDFKDFAC WDSTDELELE LELELEQQKQ EKDSDLAALV GSISQPQKKK RSAAAGSLLV  60
DLNLSDAPPA GHLFKDPNKP SAVASSSSPL SSPSSSSSSS KRVKSNGADE QKMSCLVEGC  120
KTDLSLCREY HRRHRVCELH SKTPVVTVRG EQKRFCQQCS RFHSLVEFDE VKRSCRKRLN  180
GHNQRRRKPK PESLYFTSNF LSGYKGPRIL QFSNPQLCAT NNVRSMWPVE AKKGAESMLY  240
SRHPSFNGGD KPFLLLQTNN DPKAASGNRA APQTFLRQQP FQTTAASPAE SRKGGHVMSS  300
DGMTRVIDSG CALYLLSSHP AQASVTQSNV TTTHPGQLLD SRLQMNGSFA EFSCSHDAED  360
KAANPEMMFL MGPDGFLDNG AQMLPILLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-241151881184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231095.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A251Q8220.0A0A251Q822_PRUPE; Uncharacterized protein
STRINGXP_008231095.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-46SBP family protein