PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008230991.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 420aa MW: 46596.1 Da PI: 4.3187 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g XP_008230991.1 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.46E-31 | 44 | 101 | No hit | No description |
SuperFamily | SSF54171 | 4.12E-19 | 45 | 102 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-34 | 45 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 45 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 45 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-27 | 45 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MARKRKVSDG VEDRSSSEGT MAWDEMVKEA SAAAELGGAR RARKRFVGVR QRPSGRWVAE 60 IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPCSHSPSS TPALPSKITN 120 LLLQRLKARN NSSSCSAPSA PLPINHHQMQ QHADHQEEEA GADFSETQYT DFLNDPEDYI 180 TSNNHDIISA SSIDYMTSSF EYCLTEKEEY STARETDQMD YGNLSEVAQT YSGGDANFVG 240 EGSEEDMDQE EEEVNDQVGV IDFQFVDDIG ASNYYSPSPF EIAEEMEEPV EPETYADEPS 300 MLRAAMKRMK YERKFSASLY AFNGIPECLK LKIGSSSSSG NAKGRGISES LSNLQRACNK 360 NKEEAAAAAA AKQEYQEVVM GKKEEEETQQ SSMDISLSSD GELSLWSSLD LQPICFLSTN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008230991.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230991.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | M5XBW4 | 0.0 | M5XBW4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230991.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-23 | related to AP2 11 |