PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230978.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 406aa    MW: 45901.5 Da    PI: 7.1471
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230978.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-1570129155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_008230978.1  70 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 129
                     789******************888855555447*************************98 PP
2AP245.71.7e-14172223155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+ V +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  XP_008230978.1 172 SKYRXVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDVAAIEYRG 223
                     79****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-1970139No hitNo description
SuperFamilySSF541712.75E-1670139IPR016177DNA-binding domain
PfamPF008471.3E-1270129IPR001471AP2/ERF domain
PROSITE profilePS5103219.58571137IPR001471AP2/ERF domain
SMARTSM003801.1E-2471143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-1571138IPR001471AP2/ERF domain
PRINTSPR003672.3E-57283IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-16172233IPR016177DNA-binding domain
CDDcd000187.80E-24172233No hitNo description
PfamPF008474.1E-10172223IPR001471AP2/ERF domain
PROSITE profilePS5103218.031173231IPR001471AP2/ERF domain
SMARTSM003807.7E-24173237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-17173232IPR001471AP2/ERF domain
PRINTSPR003672.3E-5213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MELMMVKNEE NPGRRRLSTA DRETEATRSV KRRRRDPPAV AVSCDNNQSE QQLPQKPADP  60
TSATTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNVTQKK KGKQVYLGAY DEEESAARAY  120
DLAALKYWGT STFTNFPISD YEKEIEIMQS VSKEEYLASL RRKSSGFSRG VSKYRXVARH  180
HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDVAAIE YRGINAVTNF DLSSYIRWLK  240
PTADDPIATQ EPETVAEPQN MPFMANSYIP TEESFSHTNP FASDYFNSPR KQEVIGINIP  300
LNTGSKSSSP TALGLLLQSS IFRELVQKNS NFSEDESTDG EETKNQPQVG SDDEFGGIFY  360
DGIGNNPFAC SSNSDGYNNP WSSITSTILL NQPTKANASD SLFFFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRLSTADRETEATRSVKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230978.10.0PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A251Q6790.0A0A251Q679_PRUPE; Uncharacterized protein
STRINGXP_008230978.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.37e-95AP2 family protein