PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230819.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 533aa    MW: 58317.5 Da    PI: 8.5407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230819.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1047.9e-33242298259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dD ynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  +++++ei+Y+g+Hnhe
  XP_008230819.1 242 DDSYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSP-NGEITEIIYKGQHNHE 298
                     8****************************************.***************8 PP
2WRKY106.61.2e-33419477159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++dpk+v++tYeg+Hnh+
  XP_008230819.1 419 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHVERASTDPKAVITTYEGKHNHD 477
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-28233300IPR003657WRKY domain
PROSITE profilePS5081123.789236300IPR003657WRKY domain
SuperFamilySSF1182908.11E-26237300IPR003657WRKY domain
SMARTSM007744.0E-36241299IPR003657WRKY domain
PfamPF031067.7E-25242298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-37404479IPR003657WRKY domain
SuperFamilySSF1182909.02E-30411479IPR003657WRKY domain
PROSITE profilePS5081138.503414479IPR003657WRKY domain
SMARTSM007749.0E-40419478IPR003657WRKY domain
PfamPF031061.7E-26420477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MAKNQDSERV SVSAPPQPQR PVITLPPRPS AEALFSGGSG ASPGPMTLVS SFFPDTYPDS  60
EYRSFSQLLA GAMGSPMGST RPIQFNENPV DGSAQLEGGS ENGGENKSGF KQSRPMNLMV  120
ARSPLFTVPP GLSPSGLLNS PGFFSPPSPF GISHQQALAQ VTAQAALAQS RMHMQAEYQP  180
SSVGAPTEPQ AYHPSVMPNE ASQQQTLPST SDHRSSARQS SEASHSDRKY QPSSVATDRP  240
ADDSYNWRKY GQKQVKGSEY PRSYYKCTHL NCPVKKKVER SPNGEITEII YKGQHNHEAP  300
QPKRGKDGGD LNGHLHSQPR PENGLQRLVG DSNGSSENIA SHSMLERHQE STQAAPGQLP  360
GASDSEELRD GEIREEGDAD EPNPKRRNID VGASEVALSH KTVTEPKIIV QTRSEVDLLD  420
DGYRWRKYGQ KVVKGNPHPR SYYKCTYAGC NVRKHVERAS TDPKAVITTY EGKHNHDVPA  480
ARNSSHNTAN NNASQLKPLA VVREKHPLLK GREFGNNDQR PVLLQLKEEQ IFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-40242480878Probable WRKY transcription factor 4
2lex_A9e-40242480878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230819.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6757080.0JN675708.1 Prunus salicina WRKY domain class transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230819.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-148WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLG8HZG70.0G8HZG7_9ROSA; WRKY domain class transcription factor
STRINGXP_008230819.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-130WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]