PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230751.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 91aa    MW: 10364.7 Da    PI: 8.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230751.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-0721571854
                    HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    +  ++Lr+l+P+ +   +s K+s + +L++++ YI++L
  XP_008230751.1 21 ELVSKLRQLVPEiR-DRRSDKVSASKVLQETCSYIRNL 57
                    56689*******76.99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.036357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-81873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-91976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-52157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRQSG TPTIKDDQII ELVSKLRQLV PEIRDRRSDK VSASKVLQET CSYIRNLHRE  60
VDDLSERLSQ LLSTIDADSP EAAIIRSLIT Q
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230751.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215199.12e-57transcription factor PRE6
RefseqXP_008230751.12e-57PREDICTED: transcription factor PRE6-like
RefseqXP_020416554.12e-57transcription factor PRE6
RefseqXP_021818928.12e-57transcription factor PRE6-like
SwissprotQ9LJX15e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A314YUW45e-56A0A314YUW4_PRUYE; Transcription factor PRE6
TrEMBLM5X4F05e-56M5X4F0_PRUPE; Uncharacterized protein
STRINGXP_008230751.19e-57(Prunus mume)
STRINGEMJ163989e-57(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-41bHLH family protein