PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230737.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 499aa    MW: 54584.8 Da    PI: 7.163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230737.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.6e-30211270159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_008230737.1 211 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCYEDMSILITTYEGTHNHP 270
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-31197272IPR003657WRKY domain
SuperFamilySSF1182904.97E-27203272IPR003657WRKY domain
PROSITE profilePS5081128.3206272IPR003657WRKY domain
SMARTSM007741.7E-35211271IPR003657WRKY domain
PfamPF031063.3E-26212270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MPNSNSRTAP EKKVDESVGY QEIYSQEESE LENARAEMGE VREENARLKL TLQHMEKDYQ  60
SLQCRFFDIL RQEASKKATN VDVGVHRIEE PNQLLSLCLG RSPREPKHDE TNTANFKLVQ  120
VDHEDLNANL TLGLGNSKLM ELPMELVRSQ KPQETSLEEP KDHSEAGAGE SLPPSSKTPK  180
TTRNEDDEVP QQANAKRARV SVRVRCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA  240
PACPVRKQVQ RCYEDMSILI TTYEGTHNHP LPFTASSMAS TTAAAASMLL SGSSTSQPGF  300
GSTATLLNGS DFGVFDSSRT NQLYLPKSNP LLPTITLDLT ASPSSSPIHL NRLSSSFASA  360
CTFPSGLSFC SSESNISPNS RGNGYLKYGS LPFDKGSFNL DQPYAEKNHQ SSSQVSLTES  420
LTKAITSDPN FKSVIAVALS SMVGGGAATH GNQSERLGHH LKWSEAAHQF TSHNPLIQNG  480
KGCSTPSIFN RLSSSDSQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-202112721777Probable WRKY transcription factor 4
2lex_A1e-202112721777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230737.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A251Q6850.0A0A251Q685_PRUPE; Uncharacterized protein
STRINGXP_008230737.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-88WRKY DNA-binding protein 72