PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230410.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 278aa    MW: 31892.6 Da    PI: 8.3589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230410.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll ++v+++G g+W+ +ar+ g++R++k+c++rw +yl
   XP_008230410.1 13 KGPWTPEEDKLLNEYVNLHGEGRWSCVARCAGLNRSGKSCRLRWVNYL 60
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1566110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W++Iar+++ gRt++++k++w+++
   XP_008230410.1  66 RGHITPQEEGIIIELHALWGNK-WSSIARYLP-GRTDNEIKNFWRTH 110
                      6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.65860IPR017930Myb domain
SuperFamilySSF466894.49E-3110107IPR009057Homeodomain-like
SMARTSM007175.7E-151262IPR001005SANT/Myb domain
PfamPF002492.8E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-241467IPR009057Homeodomain-like
CDDcd001673.38E-111560No hitNo description
PROSITE profilePS5129424.55461115IPR017930Myb domain
SMARTSM007173.7E-1465113IPR001005SANT/Myb domain
PfamPF002495.4E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2368114IPR009057Homeodomain-like
CDDcd001678.23E-1070111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGWGFAEQQG WRKGPWTPEE DKLLNEYVNL HGEGRWSCVA RCAGLNRSGK SCRLRWVNYL  60
RPGLKRGHIT PQEEGIIIEL HALWGNKWSS IARYLPGRTD NEIKNFWRTH FKKKEKCTQK  120
QEKRKAQILL AKQQQQQEQQ QQQQLQEDQN LKIRATPQSE ASQGENINMT TDHEAQARQE  180
NNMNLFSSSY PNLVGDQYCL PALMNQGSVG SWADILGEEG LFMGRLWNLD DEHVNGRMDR  240
NTSLSQCNKS AMQNQAAVTA FSSGGDYSNT FYNGGYIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24131147107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230410.10.0PREDICTED: myb-related protein 305
TrEMBLA0A251Q5C70.0A0A251Q5C7_PRUPE; Uncharacterized protein
STRINGXP_008230410.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.17e-71myb domain protein 121