PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008230294.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 269aa MW: 30594.7 Da PI: 8.6724 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.4 | 1.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss XP_008230294.1 9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 92.9 | 5.4e-31 | 85 | 174 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + + ++ e+ kL ++ie Lqr++Rh+ GedL+sLsl+eLq+Le qLe++lk+iR++Kn+l++e+i+ l kk+k+lqe+n++L kkl+e XP_008230294.1 85 DPQGSCWSLEYPKLAARIEVLQRKLRHFTGEDLDSLSLRELQNLELQLETALKRIRTRKNQLMHESISVLHKKQKALQEQNNSLGKKLKE 174 5566789********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.001 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-33 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.37E-44 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 16.077 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.3E-26 | 90 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGRGKVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFST KGKLFEYSSD 60 SSMESILERY DQYSHAEQQL TTDFDPQGSC WSLEYPKLAA RIEVLQRKLR HFTGEDLDSL 120 SLRELQNLEL QLETALKRIR TRKNQLMHES ISVLHKKQKA LQEQNNSLGK KLKEKENMLE 180 VEHDGQVQQV EQHQSNQAAH NSSTLMLMPP PPPQTSSTPA LLASLTIGGG IQARGGMEDG 240 DDNDGRTQTR PPPTTNTLMP MWMYRHFNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 6e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 6e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 6e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 6e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008230294.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP347546 | 0.0 | KP347546.1 Prunus pseudocerasus cauliflower A-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230294.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A | ||||
Swissprot | D7SMN6 | 1e-104 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A291IDA7 | 1e-171 | A0A291IDA7_PRUAR; Agamous-like MADS-box protein AGL8-like protein | ||||
STRING | XP_008230294.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-76 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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