PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230164.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 446aa    MW: 49498.4 Da    PI: 5.4465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230164.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.32.2e-88464322373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++ +++ ++ ++ s++s++  ++ +++++l  ++++ P+++f+
  XP_008230164.1  46 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKVCPTPMN-FNGSTSSSTIPTRLMSVTELagYVDLIPWHRFG 139
                     689***************************************************8777775.5555555445666666666689*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvak. 184
                     + + N+aI +a++g+ +vHi+Df+i++++QWp+L++aLa+Rpegpp  lR+T+ +   ++    + + ee+g rL +f +  +vpfefnv+  + 
  XP_008230164.1 140 YCASNSAIFKAIQGCPKVHILDFSITHCMQWPTLIDALAKRPEGPPnLLRVTVPNWRPQVpplLNVSSEEVGLRLGNFSRFKDVPFEFNVIENSs 234
                     ******************************************9999689***988755558899999***********************94443 PP

            GRAS 185 rledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     +le l     ++++L+++ +E+l+Vn++  l +l de+ + +        r+++L++++sl+P+++vvv++++d++++s+  r++ +++y++  f
  XP_008230164.1 235 SLEFLlstqlNPSSLDLRDDEVLVVNCQNWLRYLSDEPRCGSPghqdgsMRNTFLNMIRSLNPRIIVVVDEDSDLSAPSLSSRITTCFNYMWIPF 329
                     55543444459************************66544332223334677******************************************* PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                     dsle+ lp++s +r+ +E   +g +i+n++  eg +r+er et    ++r++++GF ++p+ e+++k++k ll +++  g+ ++ e++ lvl+Wk
  XP_008230164.1 330 DSLETFLPKDSTQRMDYESD-VGHKIENIIGFEGHQRIERLETGVAMSQRIRNVGFLSAPFCEETVKEVKGLLDEHA-SGWGMKREEDMLVLTWK 422
                     ********************.********************************************************.889999999******** PP

            GRAS 364 drpLvsvSaW 373
                     +++ v+ +aW
  XP_008230164.1 423 GHNSVFSTAW 432
                     ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.96819414IPR005202Transcription factor GRAS
PfamPF035147.5E-8646432IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MKTEVRGSTT SISLQNPTTI FNTSQGASLT GALKGCLGSL DGACIEKLLL HCASALESND  60
VTLAQQVMWV LNNVASSVGD PNQRLTSWIL RALISRASKV CPTPMNFNGS TSSSTIPTRL  120
MSVTELAGYV DLIPWHRFGY CASNSAIFKA IQGCPKVHIL DFSITHCMQW PTLIDALAKR  180
PEGPPNLLRV TVPNWRPQVP PLLNVSSEEV GLRLGNFSRF KDVPFEFNVI ENSSSLEFLL  240
STQLNPSSLD LRDDEVLVVN CQNWLRYLSD EPRCGSPGHQ DGSMRNTFLN MIRSLNPRII  300
VVVDEDSDLS APSLSSRITT CFNYMWIPFD SLETFLPKDS TQRMDYESDV GHKIENIIGF  360
EGHQRIERLE TGVAMSQRIR NVGFLSAPFC EETVKEVKGL LDEHASGWGM KREEDMLVLT  420
WKGHNSVFST AWVANGPNPN GLLMED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-563943227418Protein SHORT-ROOT
5b3h_E2e-563943227418Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230164.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A251Q4820.0A0A251Q482_PRUPE; Uncharacterized protein
STRINGXP_008230164.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-122GRAS family protein