PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230097.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 439aa    MW: 49571.2 Da    PI: 8.5458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230097.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06731127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    +kt+lC  ++r G C + ++C+FaHg+
  XP_008230097.1  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                    69*********.*****.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.22E-5436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9536IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGGRDSGGD DLRDKLERRY  60
SPRRRYSPER DGRGRHVLRE YSPSRSLEKE NFEYSFGNSK RRKKQHLDGQ SDISGSLRIS  120
NETEHEAKEA NTRGVLEEQL KQLQSEINML DHRRSQLGVY LEEKSQEVDS LTSKIKELEA  180
QLYKEKEDCK RISSKVKKFV KAHSRNSRIQ DQLKRSQVRL NKLGDQLALD IYGIDVNEED  240
SSINIVSDGD GETTGFPVTP HNERLNDASP SKIRLEAIRD YAKESKQSAH STRGHLTTSS  300
RPKKLSRWNI HPAQSNFDKK NEAVSNAIGS PKQLTNEGKH DRRKTASSSI LSADMLKISE  360
SAPVVPSTSM AAHPVDTEVE IEPEDKIEMV GKASGKIEEG AAYENVSFSL PLPPPPPIPK  420
NNYSQYEGDD EIIDVQGAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230097.10.0PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2
TrEMBLA0A251Q4400.0A0A251Q440_PRUPE; Uncharacterized protein
STRINGXP_008230096.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.15e-40C3H family protein