PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230096.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 440aa    MW: 49642.2 Da    PI: 8.5458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230096.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06731127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    +kt+lC  ++r G C + ++C+FaHg+
  XP_008230096.1  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                    69*********.*****.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.22E-5436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9536IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGGRDSGGD DLRDKLERRY  60
SPRRRYSPER DGRGRHVLRA EYSPSRSLEK ENFEYSFGNS KRRKKQHLDG QSDISGSLRI  120
SNETEHEAKE ANTRGVLEEQ LKQLQSEINM LDHRRSQLGV YLEEKSQEVD SLTSKIKELE  180
AQLYKEKEDC KRISSKVKKF VKAHSRNSRI QDQLKRSQVR LNKLGDQLAL DIYGIDVNEE  240
DSSINIVSDG DGETTGFPVT PHNERLNDAS PSKIRLEAIR DYAKESKQSA HSTRGHLTTS  300
SRPKKLSRWN IHPAQSNFDK KNEAVSNAIG SPKQLTNEGK HDRRKTASSS ILSADMLKIS  360
ESAPVVPSTS MAAHPVDTEV EIEPEDKIEM VGKASGKIEE GAAYENVSFS LPLPPPPPIP  420
KNNYSQYEGD DEIIDVQGAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230096.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230096.10.0PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X1
TrEMBLA0A251Q4400.0A0A251Q440_PRUPE; Uncharacterized protein
STRINGXP_008230096.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF974955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.16e-40C3H family protein