PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230079.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 754aa    MW: 82137.6 Da    PI: 5.7508
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230079.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2091146156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_008230079.1  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146
                     688999***********************************************999 PP
2START217.83.6e-682815021206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     e+a +a++el+++a+ +ep+W++s     +  n+de++++f++        ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+tl
  XP_008230079.1 281 EIAVAAMEELIRMAQMGEPLWMTSLdgntTVFNEDEYIRTFPRVAPkpsnhFKCEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRAMTL 374
                     57899********************88777789********99777999999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d  +++p       ++++pSg+li++++ng+skvtwvehv
  XP_008230079.1 375 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHVDGTWAVVDVSLDTLRPNPA---PRSCQRRPSGCLIQEMPNGYSKVTWVEHV 466
                     **************************************************************4...455789*********************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     d+++r +h+l+++lv+sg a+gak+wvatl+rqce+
  XP_008230079.1 467 DVDERGVHNLYKQLVNSGNAFGAKRWVATLDRQCER 502
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-2371146IPR009057Homeodomain-like
SuperFamilySSF466897.1E-2074148IPR009057Homeodomain-like
PROSITE profilePS5007116.95788148IPR001356Homeobox domain
SMARTSM003894.8E-2089152IPR001356Homeobox domain
PfamPF000464.3E-1891146IPR001356Homeobox domain
CDDcd000862.65E-1991149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084842.834272505IPR002913START domain
SuperFamilySSF559614.67E-36273504No hitNo description
CDDcd088751.36E-123276501No hitNo description
PfamPF018521.4E-57281502IPR002913START domain
SMARTSM002346.6E-63281502IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-6350501IPR023393START-like domain
SuperFamilySSF559614.6E-23521746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MPAGLMIPAR NMPSMIGSNG NISGFGSSSG LTLGQPNLME AGHLHPLDMA PNTSESDIAR  60
IREDDFDSAT KSGSDNPEGG SGDDQDPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGSASC  180
PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVGNYPL LSSPVPSRSP  240
LDLGVGSFGG QPGMAGEMYG GGDLLRSISG PNEADKPLII EIAVAAMEEL IRMAQMGEPL  300
WMTSLDGNTT VFNEDEYIRT FPRVAPKPSN HFKCEASRES AVVIMNHINL VEILMDVNQW  360
STVFSGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHVDG  420
TWAVVDVSLD TLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHVDVDE RGVHNLYKQL  480
VNSGNAFGAK RWVATLDRQC ERLASALASN IPTGDVGVIT NQEGRKSMLK LAERMVISFC  540
AGVSASTTHT WTTLPGTGAD DVRAMTRKSA DDPGRXPGIV LSAATSFWLP VPPKRVFEFL  600
RDENSRNEWD ILSNGGIVQE MAHIANGRDT GNCVSLLRSA NSSQSNMLIL QESCTDQTAS  660
FVIYAPVDIV AMNVVLNGSD PDYVALLPSG FAILPDGGGM GDSGSGGSLL TVAFQILVDS  720
VPTAKLSLGS VATVNNLIAC TVERIKAALS CDTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230079.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A251Q3U20.0A0A251Q3U2_PRUPE; Uncharacterized protein
STRINGXP_008230079.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2