PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229879.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 486aa    MW: 52919.3 Da    PI: 6.2947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229879.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.7e-29113170260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dgy+WrKYGqK vkg+ + rsYYrCt+a+Cpvk++ver++ ++++++++Y geH+h+k
  XP_008229879.1 113 EDGYHWRKYGQKLVKGNAYVRSYYRCTHAKCPVKRQVERTH-NGQITDTVYFGEHQHPK 170
                     8***************************************9.***************85 PP
2WRKY1048.4e-33282340159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d kvv+ tYeg+H+h+
  XP_008229879.1 282 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERASHDSKVVIATYEGQHDHD 340
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-25105170IPR003657WRKY domain
PROSITE profilePS5081121.712107171IPR003657WRKY domain
SuperFamilySSF1182903.92E-23111170IPR003657WRKY domain
SMARTSM007746.4E-32112170IPR003657WRKY domain
PfamPF031062.9E-23113169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-35268342IPR003657WRKY domain
SuperFamilySSF1182903.53E-29274342IPR003657WRKY domain
PROSITE profilePS5081135.244277342IPR003657WRKY domain
SMARTSM007745.4E-38282341IPR003657WRKY domain
PfamPF031069.1E-26283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MISLGEPGTD KIASDIVPKK ESSNSEIHAP HQTPDNGICS LQSDHRGNVQ SLIPEKSLQL  60
PDDVGTASQS NQEGSVTSLT SEKAPQTPET SALVLRSGQE GSTPSTARER GLEDGYHWRK  120
YGQKLVKGNA YVRSYYRCTH AKCPVKRQVE RTHNGQITDT VYFGEHQHPK AQVNVPVAVS  180
FLVSIVEERP EELLLTGVEG KSSDVHGHTS NQIEPVDPAQ LSTVADNEGV QRVLSQSNRT  240
RDGDPDSKRQ KKEKHNGNSI PVDKPAGEPR VVVQTMSEAD IVNDGYRWRK YGQKLVKGNP  300
NPRSYYRCSN PGCPVKKHVE RASHDSKVVI ATYEGQHDHD MPPTRTVTHN AAASNVITTA  360
RNGESGTTSE GNAVCHDTSP EHEDKPNKQL NVEPRTKSSD VAGCDMVVDS DLGPERKLNE  420
QVVGKACTTE ESDAPDIIVP RANELQNGES GIKSEGNNAC IDTVIHGNLC PESNSPEQKN  480
PKAEPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-37112343275WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229878.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_008229879.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_008229880.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_008229881.10.0PREDICTED: WRKY transcription factor 1
TrEMBLA0A286QXR30.0A0A286QXR3_9ROSA; Putative WRKY transcription factor 1
STRINGXP_008229878.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-90zinc-dependent activator protein-1