PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229811.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 459aa    MW: 49923.8 Da    PI: 8.3613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229811.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-1274100127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C +++rtG C yG++C+F+H++
  XP_008229811.1  74 PGEPDCIYYLRTGLCGYGSNCRFNHPK 100
                     5789*********************96 PP
2zf-CCCH38.52e-12118142327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++CkF+H++
  XP_008229811.1 118 QPDCGYFLKTGTCKYGSTCKFHHPR 142
                     789********************96 PP
3zf-CCCH382.7e-12165187527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G+ CkF+H++
  XP_008229811.1 165 SCPYYMRTGSCKFGPACKFHHPQ 187
                     6********************97 PP
4zf-CCCH36.11.1e-11303328227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ tGtCkyG  Ck++H++
  XP_008229811.1 303 DQPECRYFMSTGTCKYGIDCKYHHPK 328
                     689*********************96 PP
5zf-CCCH33.47.4e-11345371127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++  +G+CkyG++C+F H++
  XP_008229811.1 345 PGQPPCSYYIMYGICKYGPTCRFDHPF 371
                     5899*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-673100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.52673101IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-975100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-578100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-47998IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6115142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793115143IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10118142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6119144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5121142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7159188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371161188IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5162187IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10164187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5165186IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685301329IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6304329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5307328IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549344372IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-7346371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5348373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSLIGETERS RAKQNKGRVY TTSVLPMPDT RQALKNAVPN QSDGNVEEAF WRLNINDNQD  60
GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQGAQYNG ELPERVGQPD  120
CGYFLKTGTC KYGSTCKFHH PRDRRGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA  180
CKFHHPQPQT LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM  240
PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYNSR TQGESASNGQ VHLSSSSLPH  300
RPDQPECRYF MSTGTCKYGI DCKYHHPKER IAESATHPLG LPSRPGQPPC SYYIMYGICK  360
YGPTCRFDHP FVEHSAGYNF GMNALPLDSS LLSYPRGWSV AHGLETSPSI SSKFPDGVKK  420
PVNKKYENSD TKTAEDSPEQ AGSVPPSPTS SEPVQDQSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229811.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
TrEMBLM5WRX40.0M5WRX4_PRUPE; Uncharacterized protein
STRINGXP_008229811.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-118C3H family protein