PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008229755.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 422aa MW: 47845.6 Da PI: 4.8686

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008229755.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	1.9e-31	105	159	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp LH++Fv+a++qLGG++kAtPk++l+ m+vkg+tl+h+kSHLQkYRl XP_008229755.1 105 KPRLRWTPHLHACFVDAINQLGGPHKATPKKLLQKMGVKGITLYHLKSHLQKYRL 159 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-28	105	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-23	105	160	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.17E-15	105	159	IPR009057	Homeodomain-like
Pfam	PF00249	4.6E-6	107	158	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MFHRGGGGGS GVPNHTYNSQ LLRAAALQPR EEEEEKERMV GCGFDYFGDD EQDFQGPPTP 60 TVTLSDDSVV VEGEEEEEEE EEEEEEEENL SHDLQTPSVL SSNFKPRLRW TPHLHACFVD 120 AINQLGGPHK ATPKKLLQKM GVKGITLYHL KSHLQKYRLG KYSVKEWKEV PETFSQDFEG 180 RSVSGTSVCS SRSQKKHSSK LIKKALTQTE VEEKLGLQIE ASFQVWKLIW ELKLINMNLV 240 LYSLVFWWHV ARKTQRGKVP DETYPHHTII LQAEKRLKLR QDAERRYMDY ALDNACKKLA 300 DQFLGSVAVD SAGVFRKDVA GLGTMVSIIP QKDQFLAYDI TKETSMLLSL EDQLGGFEAQ 360 REAYHETEDH LISHGNSENS SVEDLQILAD DDKIMEQSLD NDPAEAYLVL DTAEMGTSSH 420 RT

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MFHRGGGGGS GVPNHTYNSQ LLRAAALQPR EEEEEKERMV GCGFDYFGDD EQDFQGPPTP  60
TVTLSDDSVV VEGEEEEEEE EEEEEEEENL SHDLQTPSVL SSNFKPRLRW TPHLHACFVD  120
AINQLGGPHK ATPKKLLQKM GVKGITLYHL KSHLQKYRLG KYSVKEWKEV PETFSQDFEG  180
RSVSGTSVCS SRSQKKHSSK LIKKALTQTE VEEKLGLQIE ASFQVWKLIW ELKLINMNLV  240
LYSLVFWWHV ARKTQRGKVP DETYPHHTII LQAEKRLKLR QDAERRYMDY ALDNACKKLA  300
DQFLGSVAVD SAGVFRKDVA GLGTMVSIIP QKDQFLAYDI TKETSMLLSL EDQLGGFEAQ  360
REAYHETEDH LISHGNSENS SVEDLQILAD DDKIMEQSLD NDPAEAYLVL DTAEMGTSSH  420
RT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	105	162	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	105	162	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	105	162	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	105	162	1	58	Protein PHOSPHATE STARVATION RESPONSE 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	203	KKHSSKLIKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008229755.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008229755.1	0.0	PREDICTED: uncharacterized protein LOC103329105 isoform X1
TrEMBL	A0A251Q2J3	0.0	A0A251Q2J3_PRUPE; Uncharacterized protein
STRING	XP_008229755.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18901	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.2	1e-30	G2-like family protein