PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229316.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 390aa    MW: 45072.1 Da    PI: 8.2139
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229316.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.3e-201163350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50
                    i n++ r++tf kRr+g++KKA+E S+LC+ +v++ii+++++     +ly+++
  XP_008229316.1 11 IANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQtdrppELYTWP 63
                    89**************************************9844444588887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.497151IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-21162IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-22298IPR002100Transcription factor, MADS-box
CDDcd002661.90E-23271No hitNo description
PRINTSPR004042.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181152IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRGRLKMEL IANERARKTT FQKRRKGMMK KAYEFSTLCE LDVCMIIYGP KQTDRPPELY  60
TWPENRDEVD RIINKYKASI MRKPAKKTFD LSDLLRDRKT KVHVDIYRAQ KEMYEAKYPT  120
WDERIESFSE NQLEALLNTL DTKLESGKRT LLNKRKQSAE CHQHQIHCMG KAAPTKIMLM  180
GGNPNNNITG ESSSQKQPCN YFMQGHVHEE DQKPMRSLSN NMVDMHPVSS FDHHHHHQSS  240
DQMLQLDNSN EYLNSLMAHN SSPMAMWMLM ESNYNYSTLQ FSSGASSSAH SQSPLEGYQN  300
NFNDPMMQSA VDNMNMNMMM LNGNINPPSS SSTSQYYARL MQPTVPYMQY YPPMPAAGVS  360
SHQVQVHASQ GKDEPYEDIN QYVVMNNRMV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229316.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A251Q0K40.0A0A251Q0K4_PRUPE; Uncharacterized protein
STRINGXP_008229316.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-25M-type_MADS family protein