PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229277.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 311aa    MW: 34597.3 Da    PI: 7.5984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229277.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.75.1e-15231255226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ + +tGtC+yG++C+FaHg
  XP_008229277.1 231 KTELCNKWEETGTCPYGENCQFAHG 255
                     8***********************9 PP
2zf-CCCH25.32.6e-08268293126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt lCr  a++G C+yG rC+F H+
  XP_008229277.1 268 YKTQLCRMVAAGGKCPYGHRCHFRHS 293
                     9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.46E-11226261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-18226262IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8229256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572229257IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-12231255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-13263296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9263298IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211267295IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5268293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
METNAAFPTS PDSSNRDFGS DFASMYRSIF PPKFTLPSSL SLTPSTRSSF SDSDSNSDDH  60
HHNHNATSQR LTQAQLILES QELRDHYDLC SSHLRDLTDE LDSLRRENSH LRSANADLVK  120
LLSSQAAFQS FLLSSSSSSA YQSPSTTSFL DDFRRLGFGS LGPRGGVVSD EASDISPTSV  180
IERNRFDVVD RVALPKSISV RSSTRPRGPG QLVSGSPTQS QVKVFNQGMV KTELCNKWEE  240
TGTCPYGENC QFAHGVRELR PVMRHPRYKT QLCRMVAAGG KCPYGHRCHF RHSLTEQERL  300
QLAVAAETRF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-24231296570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229277.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
TrEMBLM5WWD30.0M5WWD3_PRUPE; Uncharacterized protein
STRINGXP_008229277.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-57C3H family protein